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Protein Overview: gi|25294260, gi|...

General Information:
Name(s) found: gi|4406813 [NCBI NR]
gi|25294260 [NCBI NR]
gi|21536835 [NCBI NR]
gi|19310829 [NCBI NR]
gi|1809315 [NCBI NR]
gi|1809305 [NCBI NR]
gi|15227957 [NCBI NR]
gi|15027881 [NCBI NR]
Description(s) found:
Found 18 descriptions.
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  • gi|4406813|gb|AAD20121.1| histone H1 [Arabidopsis thaliana] [NCBI NR]
  • pir||F84559 histone H1 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|21536835|gb|AAM61167.1| histone H1 [Arabidopsis thaliana] [NCBI NR]
  • gi|19310829|gb|AAL85145.1| putative histone H1 protein [Arabidopsis thaliana] [NCBI NR]
  • gi|1809315|gb|AAC49790.1| histone H1-3 [Arabidopsis thaliana] [NCBI NR]
  • gi|1809305|gb|AAC49789.1| histone H1-3 [Arabidopsis thaliana] [NCBI NR]
  • gi|15227957|ref|NP_179396.1| HIS1-3 (HISTONE H1-3); DNA binding / nucleosomal DNA binding [Arabidopsis thaliana] [NCBI NR]
  • gi|15027881|gb|AAK76471.1| putative histone H1 protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 167 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    nucleosome [IEA][ISS]
    Biological Process: nucleosome assembly [ISS]
    response to water deprivation [IEP]
    Molecular Function: DNA binding [ISS]
    nucleosomal DNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEDKILKKT PAAKKPRKPK TTTHPPYFQM IKEALMVLKE KNGSSPYAIA KKIEEKHKSL  60
   61 LPESFRKTLS LQLKNSVAKG KLVKIRASYK LSDTTKMITR QQDKKNKKNM KQEDKEITKR 120
  121 TRSSSTRPKK TVSVNKQEKK RKVKKARQPK SIKSSVGKKK AMKASAA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..167] PSI-BLAST 10.69897 Histone H5, globular domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle