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Protein Overview: FAS2_ARATH

General Information:
Name(s) found: FAS2_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • Chromatin assembly factor 1 subunit FAS2 OS=Arabidopsis thaliana GN=FAS2 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 487 amino acids

    Gene Ontology:
    Cellular Component: chromatin assembly complex [IPI]
    Biological Process: cell proliferation [IMP]
    heterochromatin formation [IMP]
    leaf development [IMP]
    double-strand break repair via homologous recombination [IMP]
    DNA recombination [IMP]
    pollen development [IGI]
    meristem structural organization [IMP]
    nucleosome assembly [IDA]
    trichome differentiation [IMP]
    Molecular Function: nucleotide binding [ISS]
    protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGGTIQISW HDGKPVLTVD FHPISGLLAT AGADYDIKLW LINSGQAEKK VPSVSYQSSL  60
   61 TYHGCAVNTI RFSPSGELLA SGADGGELFI WKLHPSETNQ SWKVHKSLSF HRKDVLDLQW 120
  121 SPDDAYLISG SVDNSCIIWD VNKGSVHQIL DAHCHYVQGV AWDPLAKYVA SLSSDRTCRI 180
  181 YANKPQTKSK GVEKMNYVCQ HVIMKADQQR GDETKTIKTH LFHDETLPSF FRRLSWSPDG 240
  241 SFLLIPAGSF KVSPTSEAVN ATYVFSRKDL SRPALQLPGA SKPVVVVRFC PVAFKLRGSS 300
  301 SEEGFFKLPY RLVFAIATLN SVYIYDTECV APIAVLAGLH YAAITDITWS PNASYLALSS 360
  361 QDGYCTLVEF EDKELGEAVS ISVGKKPVDG EEKKHDLEKG DELMTETTPD ESKKQAELEQ 420
  421 NEESKQPLPS KITTDGKEKE HIMQKTDDEV MTETRHEEEN QPLQSKVNTP VSNKPARKRI 480
  481 TPMAIDP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..52] PSI-BLAST 70.69897 No description for 2gnqA was found.
    2 View Details [53..151] PSI-BLAST 4.39794 Crystal Structure of human dipeptidyl peptidase IV in complex with a decapeptide (tNPY) at 2.3 Ang. Resolution
    3 View Details [152..487] PSI-BLAST 10.0 No description for 2i3sA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  2.79445416141967 bayes_pls_golite062009
  • binding
    		•  2.42570478946173 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.3610959773142 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.30918780727915 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.29049708962212 bayes_pls_golite062009
  • dynein binding
    		•  1.74989209255308 bayes_pls_golite062009
  • DNA binding
    		•  1.71685536470455 bayes_pls_golite062009
  • GTPase activity
    		•  1.66665311782591 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  1.59258100795958 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  1.48624129577934 bayes_pls_golite062009
  • structural molecule activity
    		•  1.47448876401574 bayes_pls_golite062009
  • transcription corepressor activity
    		•  1.41752877005447 bayes_pls_golite062009
  • protein binding
    		•  1.21879977456466 bayes_pls_golite062009
  • transporter activity
    		•  1.21549336905926 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.19593750149343 bayes_pls_golite062009
  • transcription factor activity
    		•  1.08768505897883 bayes_pls_golite062009
    		• 0.88172763425403 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.734793983890004 bayes_pls_golite062009
  • histone binding
    		•  0.685319917508843 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.625780732991652 bayes_pls_golite062009
  • signal transducer activity
    		•  0.577438981735303 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.577438981735303 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.535041400676017 bayes_pls_golite062009
  • actin binding
    		•  0.529861581509437 bayes_pls_golite062009
  • transcription factor binding
    		•  0.489473003915035 bayes_pls_golite062009
  • snoRNA binding
    		•  0.347797037104681 bayes_pls_golite062009
  • receptor activity
    		•  0.322599767074871 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.30761651528651 bayes_pls_golite062009
  • protein transporter activity
    		•  0.304681243699511 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.220747580531792 bayes_pls_golite062009
  • hydrolase activity
    		•  0.181211933860468 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.00585398682921312 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle