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Protein Overview: gi|8777334, gi|3...

General Information:
Name(s) found: gi|8777334 [NCBI NR]
gi|30697051 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|8777334|dbj|BAA96924.1| NADP-dependent malate dehydrogenase [Arabidopsis thaliana] [NCBI NR]
  • gi|30697051|ref|NP_568875.2| malate dehydrogenase (NADP), chloroplast, putative [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 442 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: carbohydrate metabolic process [IEA]
    malate metabolic process [IEA]
    cellular carbohydrate metabolic process [IEA]
    metabolic process [IEA]
    glycolysis [IEA]
    Molecular Function: malate dehydrogenase activity [IEA]
    oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [IEA]
    oxidoreductase activity [IEA]
    catalytic activity [IEA]
    malate dehydrogenase (NADP+) activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNQA  60
   61 PVAVQENGLV KTKKECYGVF CLTYDLKAEE ETRSWKKLIN IAVSGAAGMI SNHLLFKLAS 120
  121 GEVFGPDQPI ALKLLGSERS IQALEGVAME LEDSLFPLLR EVDIGTDPNE VFQDVEWAIL 180
  181 IGAKPRGPGM ERADLLDING QIFAEQGKAL NKAASPNVKV LVVGNPCNTN ALICLKNAPN 240
  241 IPAKNFHALT RLDENRAKCQ LALKAGVFYD KVSNMTIWGN HSTTQVPDFL NARINGLPVK 300
  301 EVITDHKWLE EGFTESVQKR GGLLIQKWGR SSAASTAVSI VDAIKSLVTP TPEGDWFSTG 360
  361 VYTDGNPYGI EEGLVFSMPC RSKGDGDYEL VKDVEIDDYL RQRIAKSEAE LLAEKRCVAH 420
  421 LTGEGIAYCD LGPVDTMLPG EV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..79] PSI-BLAST 13.522879 Tumor susceptibility gene 101 (TSG101) UEV domain
    2 View Details [80..442] PSI-BLAST 109.0 Malate dehydrogenase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • malate dehydrogenase activity
    		•  7.69241456337154 bayes_pls_golite062009
  • L-malate dehydrogenase activity
    		•  3.86701960595079 bayes_pls_golite062009
  • malic enzyme activity
    		•  2.98382582538724 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.75947908917144 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  2.58076782195922 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  1.88605255677599 bayes_pls_golite062009
  • catalytic activity
    		•  1.67029398049886 bayes_pls_golite062009
  • NAD or NADH binding
    		•  1.32276254629683 bayes_pls_golite062009
  • alcohol dehydrogenase (NAD) activity
    		•  1.27032644348698 bayes_pls_golite062009
  • retinol dehydrogenase activity
    		•  1.16811519855038 bayes_pls_golite062009
  • L-lactate dehydrogenase activity
    		•  1.07211664452474 bayes_pls_golite062009
  • lactate dehydrogenase activity
    		•  0.836910434556944 bayes_pls_golite062009
  • alcohol dehydrogenase activity, zinc-dependent
    		•  0.729242797855749 bayes_pls_golite062009
  • coenzyme binding
    		•  0.59785037604907 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  0.527946013169731 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
    		•  0.33551402794014 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  0.19685680097448 bayes_pls_golite062009
  • malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity
    		•  0.120195861875768 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle