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Protein Overview: RHD32_ARATH

General Information:
Name(s) found: RHD32_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9759601|dbj|BAB11389.1| GTP-binding protein-like; root hair defective 3 protein-like [Arabidopsis thaliana] [NCBI NR]
  • gi|15242330|ref|NP_199329.1| root hair defective 3 GTP-binding (RHD3) family protein [Arabidopsis thaliana] [NCBI NR]
  • Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana GN=At5g45160 PE=2 SV=1 [Swiss-Prot]
  • (Q9FKE9) GTP-binding protein-like, root hair defective 3 protein-like [athaliana3702.FASTAC.txt]
  • GTP-binding protein-like; root hair defective 3 protein-like [Arabidopsis thaliana]gi|15242330|ref|NP_199329.1| root hair defective 3 GTP-binding (RHD3) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Root hair defective 3 GTP-binding (RHD3) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | root hair defective 3 GTP-binding (RHD3) family protein | chr5:18282218-18287262 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ATP binding / GTP binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • GTP-binding protein-like; root hair defective 3 protein-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Root hair defective 3 GTP-binding protein (RHD3) | chr5:18264991-18270035 FORWARD LENGTH=834 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 834 amino acids

    Gene Ontology:
    Cellular Component: endoplasmic reticulum [IDA]
    Biological Process: NONE FOUND
    Molecular Function: GTP binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGENDDGCST QLIDGNGEFN VKGLDNFVKK TKLSDCGLSY AVVAIMGPQS SGKSTLLNHL  60
   61 FKTSFREMDA FAGRSQTTKG IWMARCVGIE PFTIAMDLEG TDGRERGEDD TTFEKQSALF 120
  121 AIAVADIVLI NMWCHDIGRE QAANKPLLKT VFQVMLRLFS PRKTTLLFVI RDKTKTPIEL 180
  181 LERALREDIQ KIWDSVRKPE AHKNTPLNEF FNVMIVALSS YEEKEKQFEQ EVAELRQRFF 240
  241 HSISPGGLAG DRRGVVPASG FSFSSQQIWK VIKENRDLDL PAHKVMVATV RCEEIANEKL 300
  301 RDLATNESWL ELHEAAEGGL VPGFGKKLSS ILEKYFSEYD AEAIYFDEGV RKEKRLQLKL 360
  361 NALDFVYPSY ATMLGHLRSN ALESFKIRLE QSLNQGEGFA KAVRDSQQSC LMVFDKGCED 420
  421 AAVKQATWDA SKIREKLCRD IDAHTFFARS AKLSELTANY EKRLTQALSE PVESLFEAGG 480
  481 KETWPSIRKL LKRETETAVT DFLDVVTGFE LDHAKIDAMV QNLKNYSQSL VEKKAREEAA 540
  541 KILIRMKDRF STVFSHDKDS MPRVWTGKED IRAITKDARA EALSLLSVMT AIRLDERPDN 600
  601 IESTLFSSLM DGTVSAASSH NRSVGTSTDP LASSSWEEVP PNNILLTPVQ CKSLWRQFKS 660
  661 ETEYTVTQAI SAQEAHKRNN NWLPPAWAIV LMIVLGFNEF MMLLKNPLYL LGFFVAFLLS 720
  721 KALWVQLDIP REFQHGAVAG VLSITSKFLP TVMNLLRKLA EEAQGKTTQE VPDLSASQTY 780
  781 RQQSPSHSIS STISESVASN ISSAGDDAEY SSPSPALVRR RNTNNVQESE ISQM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..556] PSI-BLAST 41.0 Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain; Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
    2 View Details [557..676] PSI-BLAST 14.69897 Heavy meromyosin subfragment
    3 View Details [677..834] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  3.10463051760206 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.95886887664984 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  2.74389108884083 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.67097555143215 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.65161658635465 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.64849912301318 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  2.50494515048649 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  2.39629638016861 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  2.39600931083427 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  2.36051733655256 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  2.35906629925754 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  2.35679406876731 bayes_pls_golite062009
  • ATPase activity
    		•  2.2625504298178 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  2.24901251684901 bayes_pls_golite062009
  • binding
    		•  2.00548409930693 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.65609907941094 bayes_pls_golite062009
  • hydrolase activity
    		•  1.34710139310747 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  1.3182108176243 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.24151268097078 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.929901285538132 bayes_pls_golite062009
  • nucleotide binding
    		•  0.922442819194247 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.920987930180051 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.920926158369519 bayes_pls_golite062009
  • DNA binding
    		•  0.829652732561224 bayes_pls_golite062009
  • GTPase activity
    		•  0.768815888267067 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.704934361725919 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.648798858522413 bayes_pls_golite062009
  • ATP binding
    		•  0.41092997612902 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.396187998943318 bayes_pls_golite062009
  • drug transmembrane transporter activity
    		•  0.38711726712063 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.385813421701492 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.377870145186619 bayes_pls_golite062009
  • translation regulator activity
    		•  0.29096092258568 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.282397764628576 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.274994961137851 bayes_pls_golite062009
  • protein binding
    		•  0.170837278876362 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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