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Protein Overview: gi|15237409, gi|...

General Information:
Name(s) found: gi|15237409 [NCBI NR]
gi|10177707 [NCBI NR]
Description(s) found:
Found 10 descriptions.
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  • gi|15237409|ref|NP_199438.1| disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] [NCBI NR]
  • gi|10177707|dbj|BAB11081.1| disease resistance protein-like [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1205 amino acids

    Gene Ontology:
    Cellular Component: intrinsic to membrane [IEA]
    Biological Process: signal transduction [IEA]
    innate immune response [IEA]
    apoptosis [IEA]
    defense response [ISS]
    Molecular Function: nucleotide binding [IEA]
    ATP binding [IEA]
    protein binding [IEA]
    transmembrane receptor activity [IEA]
    nucleoside-triphosphatase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSSSRNW LYDVFLSFRG GDVRVTFRSH FLKEFDRKLI TAFRDNEIER SHSLWPDLEQ  60
   61 AIKESRIAVV VFSKNYASSS WCLNELLEIV NCNDKIIIPV FYGVDPSQVR YQIGEFGKIF 120
  121 EKTCKRQTEE VKNQWKKALT HVANMLGFDS SKWDDEAKMI EEIANDVLRK LLLTTSKDFE 180
  181 DFVGLEDHIA NMSALLDLES KEVKMVGIWG SSGIGKTTIA RALFNNLFRH FQVRKFIDRS 240
  241 FAYKSREIHS SANPDDHNMK LHLQESFLSE ILRMPNIKID HLGVLGERLQ HQKVLIIIDD 300
  301 VDDQVILDSL VGKTQWFGNG SRIIVVTNNK HFLTAHGIDR MYEVSLPTEE HALAMLCQSA 360
  361 FKKKSPPEGF EMLVVQVARY AGSLPLVLKV LGSYLSGKDK EYWIDMLPRL QNGLNDKIER 420
  421 ILRISYDGLE SEDQAIFRHI ACIFNHMEVT TIKSLLANSI YGANVGLQNL VDKSIIHVRW 480
  481 GHVEMHPLLQ EMGRKIVRTQ SIGKPRKREF LVDPNDICDV LSEGIDTQKV LGISLETSKI 540
  541 DELCVHESAF KRMRNLRFLK IGTDIFGEEN RLHLPESFDY LPPTLKLLCW SEFPMRCMPS 600
  601 NFCPKNLVTL KMTNSKLHKL WEGAVPLTCL KEMDLDGSVN LKEIPDLSMA TNLETLNFEN 660
  661 CKSLVELPSF IQNLNKLLKL NMAFCNSLET LPTGFNLKSL NRIDFTKCSK LRTFPDFSTN 720
  721 ISDLYLTGTN IEELPSNLHL ENLIDLRISK KEIDGKQWEG VMKPLKPLLA MLSPTLTSLQ 780
  781 LQNIPNLVEL PCSFQNLIQL EVLDITNCRN LETLPTGINL QSLDSLSFKG CSRLRSFPEI 840
  841 STNISSLNLE ETGIEEVPWW IDKFSNLGLL SMDRCSRLKC VSLHISKLKR LGKVDFKDCG 900
  901 ALTIVDLCGC PIGMEMEANN IDTVSKVKLD FRDCFNLDPE TVLHQESIIF KYMLFPGKEE 960
  961 MPSYFTYRTT GSSSLTIPLL HLPLSQPFFR FRVGALVTNV KHGKNIKVKC EFKDRFGNSF1020
 1021 HVGSDDFYVY LLFTKSQKGS QMLTILDCCI PLNEGNASLA QGNYYDHVDI NIHISSGGWR1080
 1081 STFELKEWGI RLLEEDSSSA ENGLGNPNST LPHVSEAEEG NMGYYTPLQE GLVNEIEHSE1140
 1141 ESGDINVGTK RSKKRMRPKK TIWGIHRFKN LLRSRKRMRV SIKNERPLKK SRTRPASIPR1200
 1201 TGRNT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..170] FFAS03 4.31 Toll-like receptor 1, TLR1
    2 View Details [171..460] PSI-BLAST 7.522879 Structure of the apoptotic protease-activating factor 1 bound to ADP
    3 View Details [461..1078] PSI-BLAST 20.522879 The molecular structure of toll-like receptor 3 ligand binding domain
    4 View Details [1079..1205] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.166909062418251 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle