| Protein: | gi|15237409, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 1205 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15237409, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
681.0 | [0..1] | [1157..1] |
|
Region A: Residues: [1-170] |
1 11 21 31 41 51
| | | | | |
1 MASSSSSRNW LYDVFLSFRG GDVRVTFRSH FLKEFDRKLI TAFRDNEIER SHSLWPDLEQ 60
61 AIKESRIAVV VFSKNYASSS WCLNELLEIV NCNDKIIIPV FYGVDPSQVR YQIGEFGKIF 120
121 EKTCKRQTEE VKNQWKKALT HVANMLGFDS SKWDDEAKMI EEIANDVLRK
|
| Detection Method: |  |
| Confidence: | 4.31 |
| Match: | 1fyvA |
| Description: | Toll-like receptor 1, TLR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.166909062418251 | bayes_pls_golite062009 |
|
Region A: Residues: [171-460] |
1 11 21 31 41 51
| | | | | |
1 LLLTTSKDFE DFVGLEDHIA NMSALLDLES KEVKMVGIWG SSGIGKTTIA RALFNNLFRH 60
61 FQVRKFIDRS FAYKSREIHS SANPDDHNMK LHLQESFLSE ILRMPNIKID HLGVLGERLQ 120
121 HQKVLIIIDD VDDQVILDSL VGKTQWFGNG SRIIVVTNNK HFLTAHGIDR MYEVSLPTEE 180
181 HALAMLCQSA FKKKSPPEGF EMLVVQVARY AGSLPLVLKV LGSYLSGKDK EYWIDMLPRL 240
241 QNGLNDKIER ILRISYDGLE SEDQAIFRHI ACIFNHMEVT TIKSLLANSI
|
| Detection Method: | |
| Confidence: | 7.522879 |
| Match: | 1z6tA |
| Description: | Structure of the apoptotic protease-activating factor 1 bound to ADP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [461-1078] |
1 11 21 31 41 51
| | | | | |
1 YGANVGLQNL VDKSIIHVRW GHVEMHPLLQ EMGRKIVRTQ SIGKPRKREF LVDPNDICDV 60
61 LSEGIDTQKV LGISLETSKI DELCVHESAF KRMRNLRFLK IGTDIFGEEN RLHLPESFDY 120
121 LPPTLKLLCW SEFPMRCMPS NFCPKNLVTL KMTNSKLHKL WEGAVPLTCL KEMDLDGSVN 180
181 LKEIPDLSMA TNLETLNFEN CKSLVELPSF IQNLNKLLKL NMAFCNSLET LPTGFNLKSL 240
241 NRIDFTKCSK LRTFPDFSTN ISDLYLTGTN IEELPSNLHL ENLIDLRISK KEIDGKQWEG 300
301 VMKPLKPLLA MLSPTLTSLQ LQNIPNLVEL PCSFQNLIQL EVLDITNCRN LETLPTGINL 360
361 QSLDSLSFKG CSRLRSFPEI STNISSLNLE ETGIEEVPWW IDKFSNLGLL SMDRCSRLKC 420
421 VSLHISKLKR LGKVDFKDCG ALTIVDLCGC PIGMEMEANN IDTVSKVKLD FRDCFNLDPE 480
481 TVLHQESIIF KYMLFPGKEE MPSYFTYRTT GSSSLTIPLL HLPLSQPFFR FRVGALVTNV 540
541 KHGKNIKVKC EFKDRFGNSF HVGSDDFYVY LLFTKSQKGS QMLTILDCCI PLNEGNASLA 600
601 QGNYYDHVDI NIHISSGG
|
| Detection Method: | |
| Confidence: | 20.522879 |
| Match: | 2a0zA |
| Description: | The molecular structure of toll-like receptor 3 ligand binding domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1079-1205] |
1 11 21 31 41 51
| | | | | |
1 WRSTFELKEW GIRLLEEDSS SAENGLGNPN STLPHVSEAE EGNMGYYTPL QEGLVNEIEH 60
61 SEESGDINVG TKRSKKRMRP KKTIWGIHRF KNLLRSRKRM RVSIKNERPL KKSRTRPASI 120
121 PRTGRNT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
