YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: VATH_ARATH

General Information:
Name(s) found: VATH_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|7801655|emb|CAB91576.1| vacuolar H(+)-ATPase subunit-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20147135|gb|AAM10284.1| AT3g42050/F4M19_10 [Arabidopsis thaliana] [NCBI NR]
  • gi|15228443|ref|NP_189791.1| vacuolar ATP synthase subunit H family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12585473|sp|Q9LX65.1|VATH_ARATH RecName: Full=V-type proton ATPase subunit H; Short=V-ATPase subunit H; AltName: Full=Vacuolar proton pump subunit H; AltName: Full=Vacuolar H(+)-ATPase subunit H [NCBI NR]
  • gi|11358916|pir||T48960 vacuolar H(+)-ATPase subunit-like protein - Arabidopsis thaliana [NCBI NR]
  • V-type proton ATPase subunit H OS=Arabidopsis thaliana GN=VHA-H PE=1 SV=1 [Swiss-Prot]
  • (Q9LX65) Probable vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) [athaliana3702.FASTAC.txt]
  • vacuolar H(+)-ATPase subunit-like protein [Arabidopsis thaliana]gi|20147135|gb|AAM10284.1| AT3g42050/F4M19_10 [Arabidopsis thaliana]gi|11358916|pir||T48960 vacuolar H(+)-ATPase subunit-like protein - Arabidopsis thalianagi|15228443|ref|NP_189791.1| vac [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Probable vacuolar ATP synthase subunit H [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | vacuolar ATP synthase subunit H family protein | chr3:14239832-14243214 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • vacuolar H(+)-ATPase subunit-like protein [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • Probable vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar proton pump subunit H) [nr-271106-contam.fasta]
  • AT3g42050/F4M19_10 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATP binding / hydrogen-transporting ATP synthase, rotational mechanism / hydrogen-transporting ATPase, rotational mechanism [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | vacuolar ATP synthase subunit H family protein | chr3:14228846-14232228 REVERSE LENGTH=441 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • V-type proton ATPase subunit H OS=Arabidopsis thaliana GN=VHA-H PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 441 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    plant-type vacuole [IDA]
    vacuolar membrane [IDA]
    vacuole [IDA]
    plasma membrane [IDA]
    Biological Process: ATP synthesis coupled proton transport [IEA]
    Molecular Function: proton-transporting ATPase activity, rotational mechanism [IEA]
    binding [IEA]
    hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQAELSIEQ VLKRDIPWET YMNTKLVSAK GLQLLRRYDK KPESARAQLL DEDGPAYVHL  60
   61 FVSILRDIFK EETVEYVLAL IYEMLSANPT RARLFHDESL ANEDTYEPFL RLLWKGNWFI 120
  121 QEKSCKILAW IISARPKAGN AVIGNGIDDV LKGLVEWLCA QLKQPSHPTR GVPIAISCLS 180
  181 SLLKEPVVRS SFVQADGVKL LVPLISPAST QQSIQLLYET CLCIWLLSYY EPAIEYLATS 240
  241 RTMQRLTEVV KHSTKEKVVR VVILTFRNLL PKGTFGAQMV DLGLPHIIHS LKTQAWSDED 300
  301 LLDALNQLEE GLKDKIKKLS SFDKYKQEVL LGHLDWNPMH KETNFWRENV TCFEENDFQI 360
  361 LRVLLTILDT SSDPRSLAVA CFDISQFIQY HAAGRVIVAD LKAKERVMKL INHENAEVTK 420
  421 NAILCIQRLL LGAKYASFLQ A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..441] PSI-BLAST 87.522879 Regulatory subunit H of the V-type ATPase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydrogen ion transmembrane transporter activity
    		•  8.27793692177437 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  6.61991113486273 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  5.91856058767561 bayes_pls_golite062009
  • proton-transporting ATPase activity, rotational mechanism
    		•  3.08652472111805 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  3.01705909078235 bayes_pls_golite062009
  • protein transporter activity
    		•  2.91465420196082 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  2.62570967627286 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  2.5665080711484 bayes_pls_golite062009
  • transporter activity
    		•  2.48700774379895 bayes_pls_golite062009
  • binding
    		•  2.4389817190572 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.26725422172281 bayes_pls_golite062009
  • clathrin binding
    		•  2.07672364145383 bayes_pls_golite062009
  • RNA binding
    		•  1.90677197622326 bayes_pls_golite062009
  • protein binding
    		•  1.63705839411934 bayes_pls_golite062009
  • cation-transporting ATPase activity
    		•  1.60849969922683 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.28481004323799 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  1.02389895825558 bayes_pls_golite062009
  • hydrolase activity
    		•  0.528047226063932 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.294257360897755 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.252495966234234 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.226380819487924 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.217517113570989 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  0.178770060806735 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  0.175241020572885 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  0.174922130116569 bayes_pls_golite062009
  • signal sequence binding
    		•  0.14931345687137 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.100181463251306 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of ions
    		•  0.0949889863173228 bayes_pls_golite062009
  • signal transducer activity
    		•  0.0689818654521059 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.0689818654521059 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.0635404099346928 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.0548082069333885 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.052195223119721 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle