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Protein Overview: NICA_ARATH

General Information:
Name(s) found: NICA_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|42565868|ref|NP_190832.3| nicastrin-related [Arabidopsis thaliana] [NCBI NR]
  • gi|37081112|sp|Q8GUM5.1|NICA_ARATH RecName: Full=Nicastrin; Flags: Precursor [NCBI NR]
  • gi|30725508|gb|AAP37776.1| At3g52640 [Arabidopsis thaliana] [NCBI NR]
  • gi|27311553|gb|AAO00742.1| Unknown protein [Arabidopsis thaliana] [NCBI NR]
  • Nicastrin OS=Arabidopsis thaliana GN=At3g52640/At3g52650 PE=2 SV=1 [Swiss-Prot]
  • (Q8GUM5) Nicastrin precursor [athaliana3702.FASTAC.txt]
  • At3g52640 [Arabidopsis thaliana]gi|27311553|gb|AAO00742.1| Unknown protein [Arabidopsis thaliana]gi|42565868|ref|NP_190832.3| nicastrin-related [Arabidopsis thaliana]gi|37081112|sp|Q8GUM5|NICA_ARATH Nicastrin precursor [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Nicastrin precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | nicastrin-related | chr3:19526056-19531268 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Nicastrin precursor [nr-271106-contam.fasta]
  • Unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g52640 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Zn-dependent exopeptidases superfamily protein | chr3:19515078-19520290 REVERSE LENGTH=676 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 676 amino acids

    Gene Ontology:
    Cellular Component: vacuole [IDA]
    plasma membrane [IDA]
    Biological Process: protein processing [IEA]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMGLIRLLS IAFTLVLLSI LPLHLSLADE ITSIESVPDL QKLMYVAVDG FPCVRLLNLS  60
   61 GEIGCSNPGI NKVVAPIIKL KDVKDLVQPH TILVTADEME DFFTRVSTDL SFASKIGGVL 120
  121 VESGSNFQQK LKGFSPDKRF PQAQFSPYEN VEYKWNSAAS SIMWRNYNFP VYLLSESGIS 180
  181 AVHEILSKKK MKHGTYTSDV AEFNMVMETT KAGTHNSEAC LQEGTCLPLG GYSVWSSLPP 240
  241 ISVSSSNNRK PVVLTVASMD TASFFRDKSF GADSPISGLV ALLGAVDALS RVDGISNLKK 300
  301 QLVFLVLTGE TWGYLGSRRF LHELDLHSDA VAGLSNTSIE TVLEIGSVGK GLSGGINTFF 360
  361 AHKTRVSSVT NMTLDALKIA QDSLASKNIK ILSADTANPG IPPSSLMAFM RKNPQTSAVV 420
  421 LEDFDTNFVN KFYHSHLDDL SNINSSSVVA AASVVARTLY ILASDNKDTS NSALGSIHVN 480
  481 ASFVEELLTC LLACEPGLSC NLVKDYISPT NTCPGNYAGV ILGEPSSKPY LGYVGDVSRF 540
  541 LWNFLADKTS VQKGNTTSVC SKGVCSKTDE VCIKAESNKE GTCVVSTTRY VPAYSTRLKY 600
  601 NDGAWTILPQ NSSDSMGMVD PVWTESNWDT LRVHVYTVQH SAYDNAVLVA GITVTTLAYI 660
  661 GILAAKSIIT KALKQD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..545] PSI-BLAST 59.0 No description for 2ootA was found.
    2 View Details [546..676] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transmembrane receptor activity
    		•  3.68442839136734 bayes_pls_golite062009
  • peptidase activity
    		•  3.64510404037841 bayes_pls_golite062009
  • receptor activity
    		•  3.43249110530054 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  3.26499474130077 bayes_pls_golite062009
  • hydrolase activity
    		•  2.98013991489506 bayes_pls_golite062009
  • signal transducer activity
    		•  2.61784313760368 bayes_pls_golite062009
  • molecular transducer activity
    		•  2.61784313760368 bayes_pls_golite062009
  • metallopeptidase activity
    		•  2.04062448553328 bayes_pls_golite062009
  • exopeptidase activity
    		•  1.70361627875478 bayes_pls_golite062009
  • catalytic activity
    		•  1.3989281287879 bayes_pls_golite062009
  • metalloexopeptidase activity
    		•  0.950629204175701 bayes_pls_golite062009
  • carboxypeptidase activity
    		•  0.891655769761122 bayes_pls_golite062009
  • binding
    		•  0.688905385320691 bayes_pls_golite062009
  • metallocarboxypeptidase activity
    		•  0.180859448845431 bayes_pls_golite062009
  • protein binding
    		•  0.00854198798870509 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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