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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NICA_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.64
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMGLIRLLS IAFTLVLLSI LPLHLSLADE ITSIESVPDL QKLMYVAVDG FPCVRLLNLS  60
   61 GEIGCSNPGI NKVVAPIIKL KDVKDLVQPH TILVTADEME DFFTRVSTDL SFASKIGGVL 120
  121 VESGSNFQQK LKGFSPDKRF PQAQFSPYEN VEYKWNSAAS SIMWRNYNFP VYLLSESGIS 180
  181 AVHEILSKKK MKHGTYTSDV AEFNMVMETT KAGTHNSEAC LQEGTCLPLG GYSVWSSLPP 240
  241 ISVSSSNNRK PVVLTVASMD TASFFRDKSF GADSPISGLV ALLGAVDALS RVDGISNLKK 300
  301 QLVFLVLTGE TWGYLGSRRF LHELDLHSDA VAGLSNTSIE TVLEIGSVGK GLSGGINTFF 360
  361 AHKTRVSSVT NMTLDALKIA QDSLASKNIK ILSADTANPG IPPSSLMAFM RKNPQTSAVV 420
  421 LEDFDTNFVN KFYHSHLDDL SNINSSSVVA AASVVARTLY ILASDNKDTS NSALGSIHVN 480
  481 ASFVEELLTC LLACEPGLSC NLVKDYISPT NTCPGNYAGV ILGEPSSKPY LGYVGDVSRF 540
  541 LWNFLADKTS VQKGNTTSVC SKGVCSKTDE VCIKAESNKE GTCVVSTTRY VPAYSTRLKY 600
  601 NDGAWTILPQ NSSDSMGMVD PVWTESNWDT LRVHVYTVQH SAYDNAVLVA GITVTTLAYI 660
  661 GILAAKSIIT KALKQD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle