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Protein Overview: GLR28_ARATH

General Information:
Name(s) found: GLR28_ARATH [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 947 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA]
    endomembrane system [IEA]
    Biological Process: response to light stimulus [NAS]
    cellular calcium ion homeostasis [NAS]
    Molecular Function: intracellular ligand-gated ion channel activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPKKNNNTF LSYFVCLFLL LEVGLGQNQI SEIKVGVVLD LNTTFSKICL TSINLALSDF  60
   61 YKDHPNYRTR LALHVRDSMK DTVQASAAAL DLIQNEQVSA IIGPIDSMQA KFMIKLANKT 120
  121 QVPTISFSAT SPLLTSIKSD YFVRGTIDDS YQVKAIAAIF ESFGWRSVVA IYVDNELGEG 180
  181 IMPYLFDALQ DVQVDRSVIP SEANDDQILK ELYKLMTRQT RVFVVHMASR LASRIFEKAT 240
  241 EIGMMEEGYV WLMTNGMTHM MRHIHHGRSL NTIDGVLGVR SHVPKSKGLE DFRLRWKRNF 300
  301 KKENPWLRDD LSIFGLWAYD STTALAMAVE KTNISSFPYN NASGSSNNMT DLGTLHVSRY 360
  361 GPSLLEALSE IRFNGLAGRF NLIDRQLESP KFEIINFVGN EERIVGFWTP SNGLVNVNSN 420
  421 KTTSFTGERF GPLIWPGKST IVPKGWEIPT NGKKIKVGVP VKKGFFNFVE VITDPITNIT 480
  481 TPKGYAIDIF EAALKKLPYS VIPQYYRFES PDDDYDDLVY KVDNGTLDAV VGDVTITAYR 540
  541 SLYADFTLPY TESGVSMMVP VRDNENKNTW VFLKPWGLDL WVTTACFFVL IGFVVWLFEH 600
  601 RVNTDFRGPP HHQIGTSFWF SFSTMVFAHR EKVVSNLARF VVVVWCFVVL VLTQSYTANL 660
  661 TSFLTVQRFQ PAAINVKDLI KNGDYVGYQH GAFVKDFLIK EGFNVSKLKP FGSSEECHAL 720
  721 LSNGSISAAF DEVAYLRAIL SQYCSKYAIV EPTFKTAGFG FAFPRNSPLT GDVSKAILNV 780
  781 TQGDEMQHIE NKWFMKQNDC PDPKTALSSN RLSLRSFWGL FLIAGIASFL ALLIFVFLFL 840
  841 YENRHTLCDD SEDSIWRKLT SLFRNFDEKD IKSHTFKSSA VHHVSSPMTQ YIPSPSTLQI 900
  901 APRPHSPSQD RAFELRRVSF TPNEERLTTQ TIHFEDEESD IECVVEQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..525] PSI-BLAST 48.69897 No description for 2e4uA was found.
    2 View Details [526..604] FFAS03 2.29 Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid
    3 View Details [605..795] PSI-BLAST 21.0 Glutamine-binding protein
    4 View Details [796..947] MSA 2.491994 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • amine binding
    		•  4.11747486942823 bayes_pls_golite062009
  • transporter activity
    		•  3.92658561501282 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.71430307970333 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.34421502810243 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  3.33883206510679 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  3.33572158012752 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  3.31947078781945 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  3.3164655425684 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  3.3159417475856 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  3.25041295044206 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  2.76254706952599 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  2.65558937563899 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  2.36995601057551 bayes_pls_golite062009
  • ATPase activity
    		•  2.35388655037218 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.29319753274625 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.27317031628667 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.27090852909065 bayes_pls_golite062009
  • peptide binding
    		•  2.13614935733644 bayes_pls_golite062009
  • binding
    		•  1.99193554770277 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  1.84929214408108 bayes_pls_golite062009
  • receptor activity
    		•  1.74349172783363 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.44487216360172 bayes_pls_golite062009
  • signal transducer activity
    		•  1.44487216360172 bayes_pls_golite062009
  • hydrolase activity
    		•  0.999095648881488 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of ions
    		•  0.88623763826001 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.810341130332095 bayes_pls_golite062009
  • protein binding
    		•  0.782435650956845 bayes_pls_golite062009
  • anion transmembrane transporter activity
    		•  0.75669016367838 bayes_pls_golite062009
  • catalytic activity
    		•  0.674312982669564 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  0.644907195402529 bayes_pls_golite062009
  • transcription factor activity
    		•  0.612192824804611 bayes_pls_golite062009
  • DNA binding
    		•  0.596947798194569 bayes_pls_golite062009
  • inorganic anion transmembrane transporter activity
    		•  0.555351218220589 bayes_pls_golite062009
  • amine transmembrane transporter activity
    		•  0.372828805396439 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.367839087542125 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.343508026849565 bayes_pls_golite062009
  • anion transmembrane-transporting ATPase activity
    		•  0.149393758153546 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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