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Protein Overview: CALX1_ARATH

General Information:
Name(s) found: CALX1_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||JN0597 calnexin-like protein - Arabidopsis thaliana [NCBI NR]
  • gi|231683|sp|P29402.1|CALX1_ARATH RecName: Full=Calnexin homolog 1; Flags: Precursor [NCBI NR]
  • gi|21555674|gb|AAM63911.1| calnexin-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21387169|gb|AAM47988.1| calnexin-like protein precursor [Arabidopsis thaliana] [NCBI NR]
  • gi|16649021|gb|AAL24362.1| calnexin homolog precursor [Arabidopsis thaliana] [NCBI NR]
  • gi|16211|emb|CAA79144.1| calnexin homolog [Arabidopsis thaliana] [NCBI NR]
  • gi|15240353|ref|NP_200987.1| calnexin 1 (CNX1) [Arabidopsis thaliana] [NCBI NR]
  • gi|10176872|dbj|BAB10079.1| calnexin homolog precursor [Arabidopsis thaliana] [NCBI NR]
  • (P29402) Calnexin homolog 1 precursor [Swiss-Prot]
  • Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=1 [Swiss-Prot]
  • calnexin-like protein [Arabidopsis thaliana]gi|10176872|dbj|BAB10079.1| calnexin homolog precursor [Arabidopsis thaliana]gi|21387169|gb|AAM47988.1| calnexin-like protein precursor [Arabidopsis thaliana]gi|16211|emb|CAA79144.1| calnexin homolog [Arabido [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Calnexin homolog 1 precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | calnexin 1 (CNX1) | chr5:24844620-24846868 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • calnexin-like protein precursor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Calnexin homolog 1 precursor [nr-271106-contam.fasta]
  • calnexin homolog precursor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • calnexin homolog [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • calcium ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • calnexin-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: CNX1, ATCNX1 | calnexin 1 | chr5:24827394-24829642 REVERSE LENGTH=530 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 530 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    mitochondrion [IDA]
    membrane [IDA]
    microsome [IDA]
    endoplasmic reticulum [IDA]
    plant-type cell wall [IDA]
    vacuole [IDA]
    plasma membrane [IDA]
    Biological Process: protein folding [IEA]
    Molecular Function: calcium ion binding [IEA]
    unfolded protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQRQLFSVF LLLLAFVSFQ KLCYCDDQTV LYESFDEPFD GRWIVSKNSD YEGVWKHAKS  60
   61 EGHEDYGLLV SEKARKYGIV KELDEPLNLK EGTVVLQYEV RFQEGLECGG AYLKYLRPQE 120
  121 AGWTPQGFDS ESPYSIMFGP DKCGGTNKVH FILKHKNPKS GEYVEHHLKF PPSVPYDKLS 180
  181 HVYTAILKPD NEVRILVDGE EKKKANLLSG EDFEPALIPA KTIPDPEDKK PEDWDERAKI 240
  241 PDPNAVKPED WDEDAPMEIE DEEAEKPEGW LDDEPEEVDD PEATKPEDWD DEEDGMWEAP 300
  301 KIDNPKCEAA PGCGEWKRPM KRNPAYKGKW SSPLIDNPAY KGIWKPRDIP NPDYFELDRP 360
  361 DYEPIAAIGI EIWTMQDGIL FDNILIAKDE KVAETYRQTT WKPKFDVEKE KQKAEEEAAG 420
  421 SADGLKSYQK VVFDLLNKVA DLSFLSAYKS KITELIEKAE QQPNLTIGVL VAIVVVFFSL 480
  481 FLKLIFGGKK AAAPVEKKKP EVAESSKSGD EAEKKEETAA PRKRQPRRDN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..422] PSI-BLAST 157.0 Calnexin
    2 View Details [423..530] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • complement component C1q binding
    		•  4.81971897425786 bayes_pls_golite062009
  • steroid hormone receptor binding
    		•  4.11346029337178 bayes_pls_golite062009
  • androgen receptor binding
    		•  3.88449123711676 bayes_pls_golite062009
  • zymosan binding
    		•  3.41405218556083 bayes_pls_golite062009
  • nuclear hormone receptor binding
    		•  3.3517714661273 bayes_pls_golite062009
  • binding
    		•  3.24845777545007 bayes_pls_golite062009
  • hormone receptor binding
    		•  3.2405597896178 bayes_pls_golite062009
  • structural molecule activity
    		•  3.0286932947016 bayes_pls_golite062009
  • unfolded protein binding
    		•  2.94586353433162 bayes_pls_golite062009
  • protein binding
    		•  2.62442480878692 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.5786381493734 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.42862869142896 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.33705817770533 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.16616430987996 bayes_pls_golite062009
  • actin binding
    		•  2.0669297251683 bayes_pls_golite062009
  • DNA binding
    		•  2.05388036301171 bayes_pls_golite062009
  • carbohydrate binding
    		•  1.90829797790335 bayes_pls_golite062009
  • sugar binding
    		•  1.89824804892868 bayes_pls_golite062009
  • receptor binding
    		•  1.70102429470678 bayes_pls_golite062009
  • cation binding
    		•  1.67588357161378 bayes_pls_golite062009
  • metal ion binding
    		•  1.67588357161378 bayes_pls_golite062009
  • ion binding
    		•  1.66900324045723 bayes_pls_golite062009
  • NACHT domain binding
    		•  1.53382521801494 bayes_pls_golite062009
  • integrin binding
    		•  1.36513827550387 bayes_pls_golite062009
  • transporter activity
    		•  1.29150662073327 bayes_pls_golite062009
  • chaperone binding
    		•  1.28860282614448 bayes_pls_golite062009
  • glycosaminoglycan binding
    		•  1.25720635817943 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.24423621131253 bayes_pls_golite062009
  • signal transducer activity
    		•  1.24423621131253 bayes_pls_golite062009
  • protein complex binding
    		•  1.23240411516711 bayes_pls_golite062009
  • RNA binding
    		•  1.22339134958708 bayes_pls_golite062009
  • heparin binding
    		•  1.15897181987617 bayes_pls_golite062009
  • transcription factor activity
    		•  1.15427978494805 bayes_pls_golite062009
  • transcription activator activity
    		•  1.11465354227601 bayes_pls_golite062009
  • polysaccharide binding
    		•  1.09475063562581 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.07075219961504 bayes_pls_golite062009
  • growth factor activity
    		•  0.850395354506359 bayes_pls_golite062009
  • pattern binding
    		•  0.83687933614214 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.801327928563072 bayes_pls_golite062009
  • mRNA binding
    		•  0.67699218614597 bayes_pls_golite062009
  • monosaccharide binding
    		•  0.5678336426881 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.546870122670733 bayes_pls_golite062009
  • extracellular matrix structural constituent
    		•  0.52360080681204 bayes_pls_golite062009
  • calcium ion binding
    		•  0.416416901481401 bayes_pls_golite062009
  • receptor activity
    		•  0.376562682962271 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  0.213382263378401 bayes_pls_golite062009
  • structural constituent of cytoskeleton
    		•  0.160855218996334 bayes_pls_golite062009
  • growth factor binding
    		•  0.0922754536898114 bayes_pls_golite062009
  • cytokine binding
    		•  0.0273545648165503 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle