YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CALX1_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQRQLFSVF LLLLAFVSFQ KLCYCDDQTV LYESFDEPFD GRWIVSKNSD YEGVWKHAKS  60
   61 EGHEDYGLLV SEKARKYGIV KELDEPLNLK EGTVVLQYEV RFQEGLECGG AYLKYLRPQE 120
  121 AGWTPQGFDS ESPYSIMFGP DKCGGTNKVH FILKHKNPKS GEYVEHHLKF PPSVPYDKLS 180
  181 HVYTAILKPD NEVRILVDGE EKKKANLLSG EDFEPALIPA KTIPDPEDKK PEDWDERAKI 240
  241 PDPNAVKPED WDEDAPMEIE DEEAEKPEGW LDDEPEEVDD PEATKPEDWD DEEDGMWEAP 300
  301 KIDNPKCEAA PGCGEWKRPM KRNPAYKGKW SSPLIDNPAY KGIWKPRDIP NPDYFELDRP 360
  361 DYEPIAAIGI EIWTMQDGIL FDNILIAKDE KVAETYRQTT WKPKFDVEKE KQKAEEEAAG 420
  421 SADGLKSYQK VVFDLLNKVA DLSFLSAYKS KITELIEKAE QQPNLTIGVL VAIVVVFFSL 480
  481 FLKLIFGGKK AAAPVEKKKP EVAESSKSGD EAEKKEETAA PRKRQPRRDN

Type	Start	End	Confidence
Signal Peptide	1	25	0.96
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	464	0.99
Transmembrane Helix	465	487	0.89
Cytoplasmic	488	530	0.98