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Protein Overview: atg-4.2

General Information:
Name(s) found: atg-4.2 / CE24740 [WormBase]
Description(s) found:
Found 17 descriptions.
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  • WBGene00014080 locus:atg-4.2 status:Partially_confirmed UniProt:Q9U1N6 protein_id:CAB54515.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 521 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNIPDDFKK IASSSRLPRK YCSSESSLSD DDGHEIEHVL KHGAPEEALT PDTERMVVLG  60
   61 QDVVQSAPAS LVPGGNLSWM SKIKSAGASM MGSIRPSSSS QDVHSTGEIE KHSKKKWKAR 120
  121 LWSTWNNIKY SSTWMSDRSD EYGGENDVVF LGRRYSTSVD ESGLRSGFEN FCSDYYSRLW 180
  181 ITYRTDFPAL LDTDTTTDCG WGCMIRTTQM MVAQAIMVNR FGRDWRFTRR KRSHVAAHGD 240
  241 EDDFDREKIQ EWMILKLFED KPTAPLGIHK MVGIAAMGKG KKAVGSWYSP SEAVFIMKKA 300
  301 LTESSSPLTG NTAMLLSIDG RVHIRDIEVE TKNWMKKLIL VIVVRLGAAE LNPIYVPHLM 360
  361 RLFAMESCLG ITGGRPDHSS WFVGYYGDQI IYLDPHVAHE YIPIDINPNT NVVDSDSKKA 420
  421 KKCPEKSYHC RLLSKMHFFD MDPSCALCFQ FESREQFDND MRQLNLSQFI DIDQGEEHGM 480
  481 KRVRDPMFSV VYGERRQPPS YEREVSETEQ AQADKHGFEM L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..131] MSA 1.055986 View MSA. No confident structure predictions are available.
    2 View Details [132..521] PSI-BLAST 126.0 Structure of human Atg4b

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • peptidase activity
    		•  4.90619850296986 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  4.64381885397949 bayes_pls_golite062009
  • endopeptidase activity
    		•  3.75054525912786 bayes_pls_golite062009
  • cysteine-type peptidase activity
    		•  3.05412701733177 bayes_pls_golite062009
  • hydrolase activity
    		•  2.66167923792227 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.13397229861051 bayes_pls_golite062009
  • small conjugating protein-specific protease activity
    		•  2.06332547782769 bayes_pls_golite062009
  • cysteine-type endopeptidase activity
    		•  1.95802900199539 bayes_pls_golite062009
  • tubulin binding
    		•  1.85112496470487 bayes_pls_golite062009
  • microtubule binding
    		•  1.82320858139311 bayes_pls_golite062009
  • binding
    		•  1.77258741259391 bayes_pls_golite062009
  • ubiquitin-specific protease activity
    		•  1.43988355875744 bayes_pls_golite062009
  • protein binding
    		•  1.08139200376412 bayes_pls_golite062009
  • catalytic activity
    		•  1.05972260874031 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.913227912866975 bayes_pls_golite062009
  • transporter activity
    		•  0.69523261160023 bayes_pls_golite062009
  • DNA binding
    		•  0.683141655614916 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.667279936700542 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.467924587720185 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.439003000540428 bayes_pls_golite062009
  • structural molecule activity
    		•  0.297752217869698 bayes_pls_golite062009
  • calcium-dependent cysteine-type endopeptidase activity
    		•  0.196538841514154 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.125654358663332 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.0241561776323942 bayes_pls_golite062009
  • transcription factor activity
    		•  0.0199148741009585 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle