| Protein: | atg-4.2 |
| Organism: | Caenorhabditis elegans |
| Length: | 521 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atg-4.2.
| Description | E-value | Query Range |
Subject Range |
|
|
524.0 | [0..41] | [511..12] |
|
Region A: Residues: [1-131] |
1 11 21 31 41 51
| | | | | |
1 MNNIPDDFKK IASSSRLPRK YCSSESSLSD DDGHEIEHVL KHGAPEEALT PDTERMVVLG 60
61 QDVVQSAPAS LVPGGNLSWM SKIKSAGASM MGSIRPSSSS QDVHSTGEIE KHSKKKWKAR 120
121 LWSTWNNIKY S
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [132-521] |
1 11 21 31 41 51
| | | | | |
1 STWMSDRSDE YGGENDVVFL GRRYSTSVDE SGLRSGFENF CSDYYSRLWI TYRTDFPALL 60
61 DTDTTTDCGW GCMIRTTQMM VAQAIMVNRF GRDWRFTRRK RSHVAAHGDE DDFDREKIQE 120
121 WMILKLFEDK PTAPLGIHKM VGIAAMGKGK KAVGSWYSPS EAVFIMKKAL TESSSPLTGN 180
181 TAMLLSIDGR VHIRDIEVET KNWMKKLILV IVVRLGAAEL NPIYVPHLMR LFAMESCLGI 240
241 TGGRPDHSSW FVGYYGDQII YLDPHVAHEY IPIDINPNTN VVDSDSKKAK KCPEKSYHCR 300
301 LLSKMHFFDM DPSCALCFQF ESREQFDNDM RQLNLSQFID IDQGEEHGMK RVRDPMFSVV 360
361 YGERRQPPSY EREVSETEQA QADKHGFEML
|
| Detection Method: | |
| Confidence: | 126.0 |
| Match: | 2d1iA |
| Description: | Structure of human Atg4b |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 4.90619850296986 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 4.64381885397949 | bayes_pls_golite062009 |
| endopeptidase activity | 3.75054525912786 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 3.05412701733177 | bayes_pls_golite062009 |
| hydrolase activity | 2.66167923792227 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.13397229861051 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 2.06332547782769 | bayes_pls_golite062009 |
| cysteine-type endopeptidase activity | 1.95802900199539 | bayes_pls_golite062009 |
| tubulin binding | 1.85112496470487 | bayes_pls_golite062009 |
| microtubule binding | 1.82320858139311 | bayes_pls_golite062009 |
| binding | 1.77258741259391 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 1.43988355875744 | bayes_pls_golite062009 |
| protein binding | 1.08139200376412 | bayes_pls_golite062009 |
| catalytic activity | 1.05972260874031 | bayes_pls_golite062009 |
| nucleic acid binding | 0.913227912866975 | bayes_pls_golite062009 |
| transporter activity | 0.69523261160023 | bayes_pls_golite062009 |
| DNA binding | 0.683141655614916 | bayes_pls_golite062009 |
| transcription regulator activity | 0.667279936700542 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.467924587720185 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.439003000540428 | bayes_pls_golite062009 |
| structural molecule activity | 0.297752217869698 | bayes_pls_golite062009 |
| calcium-dependent cysteine-type endopeptidase activity | 0.196538841514154 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.125654358663332 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.0241561776323942 | bayes_pls_golite062009 |
| transcription factor activity | 0.0199148741009585 | bayes_pls_golite062009 |
