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Protein Overview: pin-2

General Information:
Name(s) found: pin-2 / CE05562 [WormBase]
Description(s) found:
Found 20 descriptions.
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  • WBGene00004030 locus:pin-2 LIM domains status:Confirmed UniProt:Q19157 protein_id:CAA93483.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 329 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    varicosity [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    axon [IDALink to PubMed article]
    Biological Process: NONE FOUND
    Molecular Function: zinc ion binding [IEALink to PubMed article]
    protein binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNAAQITKQ RNSGKRHRAC ERCREQFELN EPYFLLGASS WHMRCFLCAQ CMDPLVGTTY  60
   61 FQFENRIYCE HDFKTLYAPV CAKCNEFVIG QVVHSSNNSY HLACFTCDEC NVHLNSQIAY 120
  121 RYQGTILCFL CNQKKPKMRI YNCNKCKQHV DNSDLLTYQE NPYHAYHFKC TTCKKVLESD 180
  181 ARTIKDDLFC PRCFDFKCEV CFDCKKVIDP QVEQSIFTMN KHWHTDHFRC ATCARPFFGH 240
  241 EHYEKNGKAY CRDDFLELIG HHCFICDRNV GGGMVHVFGK AFCPECYRCR GCDKVLHYKD 300
  301 KVMELDLMPL CKKCLGNKTF QKALKYKSL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..137] PSI-BLAST 53.09691 No description for 2i13A was found.
    2 View Details [138..329] PSI-BLAST 15.221849 Transcription factor IIIA, TFIIIA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  4.70988788192472 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.58713908116892 bayes_pls_golite062009
  • DNA binding
    		•  4.56219307357342 bayes_pls_golite062009
  • transcription activator activity
    		•  3.52873291636993 bayes_pls_golite062009
  • transcription factor activity
    		•  3.50954949535763 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.22082323675675 bayes_pls_golite062009
  • binding
    		•  3.10743787485868 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.53101891154822 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.22104591928521 bayes_pls_golite062009
  • chromatin binding
    		•  2.18464662431232 bayes_pls_golite062009
  • protein binding
    		•  2.05530362750351 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.64349785387632 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.63161912031789 bayes_pls_golite062009
  • transcription factor binding
    		•  1.39608963544799 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.12277938241964 bayes_pls_golite062009
  • signal transducer activity
    		•  1.12277938241964 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.93314267845352 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.77874411480713 bayes_pls_golite062009
  • tubulin binding
    		•  0.744315484113484 bayes_pls_golite062009
  • microtubule binding
    		•  0.576452165256057 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.53991278722671 bayes_pls_golite062009
  • receptor activity
    		•  0.36635758793995 bayes_pls_golite062009
  • catalytic activity
    		•  0.245893663605433 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.10558148421807 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle