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Protein Overview: cyn-9

General Information:
Name(s) found: cyn-9 / CE03745 [WormBase]
Description(s) found:
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  • WBGene00000885 locus:cyn-9 Peptidyl-prolyl cis-trans isomerase 9 status:Confirmed UniProt:Q09637 protein_id:CAA88291.1 [WormBase]
  • pir||T18579 cyclophilin isoform 9 - Caenorhabditis elegans [NCBI NR]
  • gi|3880236|emb|CAA88291.1| C. elegans protein T27D1.1, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|3874298|emb|CAA85495.1| C. elegans protein T27D1.1, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|2262220|gb|AAB94648.1| cyclophilin isoform 9 [Caenorhabditis elegans] [NCBI NR]
  • gi|17552784|ref|NP_497745.1| CYclophyliN family member (cyn-9) [Caenorhabditis elegans] [NCBI NR]
  • gi|1706255|sp|Q09637.3|CYP9_CAEEL RecName: Full=Peptidyl-prolyl cis-trans isomerase 9; Short=PPIase; Short=Rotamase; AltName: Full=Cyclophilin-9 [NCBI NR]
  • gi|1185450|gb|AAC47131.1| cyclophilin isoform 9 [NCBI NR]
  • Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis elegans GN=cyn-9 PE=2 SV=3 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE03745 WBGene00000885 locus:cyn-9 cyclophilin related protein status:Confirmed SW:Q09637 protein_id:CAA88291.1 [wormpep150.fasta]
  • 03745 WBGene00000885 locus:cyp-9 cyclophilin related protein status:Confirmed SW:Q09637 protein_id:CAA88291.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • CYcloPhilin, peptidyl-prolyl cis-trans isomerase (35.8 kD) (cyp-9) [Caenorhabditis elegans]gi|3880236|emb|CAA88291.1| Hypothetical protein T27D1.1 [Caenorhabditis elegans]gi|3874298|emb|CAA85495.1| Hypothetical protein T27D1.1 [Caenorhabditis elegans]g [nrdb_11152004_Chlamydomonas]
  • CE03745 WBGene00000885 locus:cyp-9 cyclophilin related protein status:Confirmed SW:Q09637 protein_id:CAA88291.1 [wormpep132.fasta]
  • 03745 WBGene00000885 locus:cyn-9 cyclophilin related protein status:Confirmed SW:Q09637 protein_id:CAA88291.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • locus:cyp-9 cyclophilin related protein status:Confirmed SW:Q09637 protein_id:CAA88291.1 [wormpep115.fasta.reversed]
  • CE03745 locus:cyp-9 cyclophilin related protein status:Confirmed SW:Q09637 protein_id:CAA88291.1 [wormpep80.hongbin]
  • CE03745 WBGene00000885 locus:cyn-9 cyclophilin related protein status:Confirmed UniProt:Q09637 protein_id:CAA88291.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE03745 WBGene00000885 locus:cyn-9 cyclophilin related protein status:Confirmed UniProt:Q09637 protein_id:CAA88291.1| [wormORF-contam.fasta]
  • Hypothetical protein T27D1.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CYclophyliN family member (cyn-9) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • cyclophilin isoform 9 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • cyclophilin isoform 9 [nr-271106-contam.fasta]
  • Peptidyl-prolyl cis-trans isomerase 9 (PPIase) (Rotamase) (Cyclophilin-9) [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE03745 WBGene00000885 locus:cyn-9 status:Confirmed UniProt:Q09637 protein_id:CAA88291.1 Peptidyl-prolyl cis-trans isomerase 9 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 309 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IDALink to PubMed article]
    Biological Process: extracellular matrix organization [TASLink to PubMed article]
    protein folding [IEALink to PubMed article][TASLink to PubMed article]
    Molecular Function: peptidyl-prolyl cis-trans isomerase activity [IEALink to PubMed article][ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAEKRVFLD ISVDENLIGR IEIRLFVEDA PKTCENFRAL CTGEVGMTPN NKARLHYKQN  60
   61 EFHRIVKKFM IQGGDITEGD GRGGFSIYGR YFDDEKFKLK HSRPYLLSMA NKGPNSNSSQ 120
  121 FFITTAAAPH CNGKHVVFGE VVKGQNVVDY IDNLAVDDKS KPLAKVLISN CGELVKKKKP 180
  181 LKTDEELAAA LEEKNNNARD NEIPKCPKSW LYRDDDNEKK HEMRNDKRRE YRSRRSRSRS 240
  241 HEKNRDYKKE NRGDSSRSQP RRDENGITVR GRGGVRFRRE RSATPEHWRR NAPTKWVHDS 300
  301 HKHPEEDLV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..309] PSI-BLAST 76.522879 Cyclophilin 40; Cyclophilin 40 isomerase domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein deacetylase activity
    		•  4.3775483906311 bayes_pls_golite062009
  • histone deacetylase activity
    		•  4.29026678196473 bayes_pls_golite062009
  • peptidyl-prolyl cis-trans isomerase activity
    		•  3.73853378771688 bayes_pls_golite062009
  • cis-trans isomerase activity
    		•  3.66963215732405 bayes_pls_golite062009
  • deacetylase activity
    		•  3.49940864924766 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
    		•  3.01511519120932 bayes_pls_golite062009
  • RNA binding
    		•  2.94609837984526 bayes_pls_golite062009
  • signal sequence binding
    		•  2.68460419248567 bayes_pls_golite062009
  • isomerase activity
    		•  1.96529188741504 bayes_pls_golite062009
  • binding
    		•  1.46018233647024 bayes_pls_golite062009
  • mRNA binding
    		•  1.45537055700871 bayes_pls_golite062009
  • unfolded protein binding
    		•  1.38124355054041 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.26149030245805 bayes_pls_golite062009
  • peroxisome targeting sequence binding
    		•  1.01220052237687 bayes_pls_golite062009
  • DNA binding
    		•  0.9531600253493 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.939772862764466 bayes_pls_golite062009
  • catalytic activity
    		•  0.748655649755714 bayes_pls_golite062009
  • hydrolase activity
    		•  0.493806105600863 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
    		•  0.408539130322443 bayes_pls_golite062009
  • transcription factor activity
    		•  0.374364600772076 bayes_pls_golite062009
  • drug binding
    		•  0.36339132904137 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.322244688184474 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.286133802341887 bayes_pls_golite062009
  • histone binding
    		•  0.268719695649015 bayes_pls_golite062009
  • protein binding
    		•  0.130251391659493 bayes_pls_golite062009
  • N-acetyltransferase activity
    		•  0.105969834846946 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle