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Protein Overview: ssr1

General Information:
Name(s) found: ssr1 / SPAC17G6.10 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • SWI/SNF and RSC complex subunit Ssr1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 527 amino acids

    Gene Ontology:
    Cellular Component: SWI/SNF complex [IDALink to PubMed article]
    nucleus [IDALink to PubMed article]
    nuclear chromatin [ICLink to PubMed article]
    cytosol [IDALink to PubMed article]
    RSC complex [IDALink to PubMed article]
    Biological Process: chromatin remodeling [ISSLink to PubMed article]
    positive regulation of gene-specific transcription from RNA polymerase II promoter [NASLink to PubMed article]
    negative regulation of gene-specific transcription from RNA polymerase II promoter [NASLink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNVTENKHD LHENGVPDSA QPMELDVSKK EDTEPEVRDE AKEFLLSQLP QVEVPEWAQW  60
   61 FDFSKVHEIE KKQNPEFFDG KNTSKTPEVY KEYRDFMIST FRLNSKVYLT FTACRRNLAG 120
  121 DVCAVLRVHR FLEQWGLINY NVNPDTRPSK IGPPSTSHFQ ILADTPRGLV PLLPPPSSSI 180
  181 PRSKAVTIED PSIVRTNIYD PSLDDVLKGK GSTPNQKPSL SNLHENNIDQ SDSPQHCYCC 240
  241 GNKFNESYYQ SQTAQKYNVC ISCYQQNRFP SPTTIADYKE VAIQNKIEDD DTWTAQELVL 300
  301 LSEGVEMYSD DWAKVASHVN TKSVEECILK FLNLPSSDKA LFKMDKVHTN PVVDSLQGKN 360
  361 PILSVVSFLA KMVPPSSFTQ KSSAKEEESD KVKGESVYPK PESESYDVEM NGKSLEDSDS 420
  421 LSELYLTNEE KKMASIIKDS VNVQIKLIES KLSHFDYLDQ HIRLKSQELD AFAQATYREK 480
  481 LYMKRECQNA RKKIEQQLQS KDTAANGLPV QSSAETSVIP ASSMSPS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..151] PSI-BLAST 34.0 Structure and function of the SWIRM domain, a conserved protein module found in chromatin regulatory complexes
    2 View Details [152..217] deduced N/A No confident structure predictions are available.
    3 View Details [218..282] PSI-BLAST 12.69897 No description for 2e5rA was found.
    4 View Details [283..344] FFAS03 2.94 Solution structure of the SANT domain of human KIAA1915 protein
    5 View Details [345..527] PSI-BLAST 3.522879 Crystal Structure Analysis of ClpB

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • transcription regulator activity
    		•  4.86538715425734 bayes_pls_golite062009
  • DNA binding
    		•  4.40186699787632 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.28652307290136 bayes_pls_golite062009
  • transcription factor activity
    		•  3.78935192723648 bayes_pls_golite062009
  • transcription repressor activity
    		•  3.3280771187468 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  3.25454589469681 bayes_pls_golite062009
  • transcription activator activity
    		•  2.92652250400688 bayes_pls_golite062009
  • binding
    		•  2.92574888336072 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.91588376840709 bayes_pls_golite062009
  • protein binding
    		•  1.84594855626241 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.57633910767639 bayes_pls_golite062009
  • chromatin binding
    		•  1.46954724788757 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.44773725829085 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  1.37810541741263 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  1.37810541741263 bayes_pls_golite062009
  • transcription corepressor activity
    		•  1.30723796612579 bayes_pls_golite062009
  • transcription factor binding
    		•  1.24678737091956 bayes_pls_golite062009
  • protein deacetylase activity
    		•  1.23476914879396 bayes_pls_golite062009
  • histone deacetylase activity
    		•  1.18710646783152 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.691780246385357 bayes_pls_golite062009
  • deacetylase activity
    		•  0.534082291544628 bayes_pls_golite062009
  • histone binding
    		•  0.489784140732052 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.244471307852075 bayes_pls_golite062009
  • telomeric DNA binding
    		•  0.233668696331578 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.201150053959035 bayes_pls_golite062009
  • N-acyltransferase activity
    		•  0.172746940896972 bayes_pls_golite062009
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle