| Protein: | ssr1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 527 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ssr1.
| Description | E-value | Query Range |
Subject Range |
|
|
444.0 | [0..7] | [523..63] |
|
|
440.0 | [0..7] | [523..86] |
|
|
440.0 | [0..1] | [523..75] |
|
|
403.0 | [0..1] | [526..404] |
|
|
402.0 | [0..44] | [526..10] |
|
|
399.0 | [0..1] | [526..405] |
|
Region A: Residues: [1-151] |
1 11 21 31 41 51
| | | | | |
1 MSNVTENKHD LHENGVPDSA QPMELDVSKK EDTEPEVRDE AKEFLLSQLP QVEVPEWAQW 60
61 FDFSKVHEIE KKQNPEFFDG KNTSKTPEVY KEYRDFMIST FRLNSKVYLT FTACRRNLAG 120
121 DVCAVLRVHR FLEQWGLINY NVNPDTRPSK I
|
| Detection Method: |  |
| Confidence: | 34.0 |
| Match: | 2fq3A |
| Description: | Structure and function of the SWIRM domain, a conserved protein module found in chromatin regulatory complexes |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [152-217] |
1 11 21 31 41 51
| | | | | |
1 GPPSTSHFQI LADTPRGLVP LLPPPSSSIP RSKAVTIEDP SIVRTNIYDP SLDDVLKGKG 60
61 STPNQK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [218-282] |
1 11 21 31 41 51
| | | | | |
1 PSLSNLHENN IDQSDSPQHC YCCGNKFNES YYQSQTAQKY NVCISCYQQN RFPSPTTIAD 60
61 YKEVA
|
| Detection Method: | |
| Confidence: | 12.69897 |
| Match: | 2e5rA |
| Description: | No description for 2e5rA was found. |
|
Region A: Residues: [283-344] |
1 11 21 31 41 51
| | | | | |
1 IQNKIEDDDT WTAQELVLLS EGVEMYSDDW AKVASHVNTK SVEECILKFL NLPSSDKALF 60
61 KM
|
| Detection Method: | |
| Confidence: | 2.94 |
| Match: | 2cu7A |
| Description: | Solution structure of the SANT domain of human KIAA1915 protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.86538715425734 | bayes_pls_golite062009 |
| DNA binding | 4.40186699787632 | bayes_pls_golite062009 |
| nucleic acid binding | 4.28652307290136 | bayes_pls_golite062009 |
| transcription factor activity | 3.78935192723648 | bayes_pls_golite062009 |
| transcription repressor activity | 3.3280771187468 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.25454589469681 | bayes_pls_golite062009 |
| transcription activator activity | 2.92652250400688 | bayes_pls_golite062009 |
| binding | 2.92574888336072 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.91588376840709 | bayes_pls_golite062009 |
| protein binding | 1.84594855626241 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.57633910767639 | bayes_pls_golite062009 |
| chromatin binding | 1.46954724788757 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.44773725829085 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 1.37810541741263 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 1.37810541741263 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.30723796612579 | bayes_pls_golite062009 |
| transcription factor binding | 1.24678737091956 | bayes_pls_golite062009 |
| protein deacetylase activity | 1.23476914879396 | bayes_pls_golite062009 |
| histone deacetylase activity | 1.18710646783152 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.691780246385357 | bayes_pls_golite062009 |
| deacetylase activity | 0.534082291544628 | bayes_pls_golite062009 |
| histone binding | 0.489784140732052 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.244471307852075 | bayes_pls_golite062009 |
| telomeric DNA binding | 0.233668696331578 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.201150053959035 | bayes_pls_golite062009 |
| N-acyltransferase activity | 0.172746940896972 | bayes_pls_golite062009 |
|
Region A: Residues: [345-527] |
1 11 21 31 41 51
| | | | | |
1 DKVHTNPVVD SLQGKNPILS VVSFLAKMVP PSSFTQKSSA KEEESDKVKG ESVYPKPESE 60
61 SYDVEMNGKS LEDSDSLSEL YLTNEEKKMA SIIKDSVNVQ IKLIESKLSH FDYLDQHIRL 120
121 KSQELDAFAQ ATYREKLYMK RECQNARKKI EQQLQSKDTA ANGLPVQSSA ETSVIPASSM 180
181 SPS
|
| Detection Method: | |
| Confidence: | 3.522879 |
| Match: | 1qvrA |
| Description: | Crystal Structure Analysis of ClpB |
Matching Structure (courtesy of the PDB): |
|
