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Protein Overview: dph1

General Information:
Name(s) found: dph1 / SPAC26A3.16 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • UBA domain protein Dph1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 354 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: proteasomal ubiquitin-dependent protein catabolic process [TASLink to PubMed article]
    negative regulation of protein catabolic process [IMPLink to PubMed article]
    cellular response to stress [RCALink to PubMed article]
    spindle pole body duplication [ISSLink to PubMed article]
    ER-associated protein catabolic process [ISSLink to PubMed article]
    Molecular Function: polyubiquitin binding [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNISLTIKA ANDQKYAVTV DSESSVLALK EAIAPVADIE KERQRLIYAG RVLKDEESLK  60
   61 TYKIQDGHSI HLVKTLGQNP AAAATNVSDR TQQVPTNIQA GQGANNPLAN LTSARYAGFN 120
  121 IPMPSASMFG PNPENPVPPS TEELANMLSN PMVQSSINEM FSNPQMLDMI INSSPHLRNA 180
  181 PPYVRQMMQS PEFRRAMTDP DTMRQMAQLH QQMGAAGIDP MSLMGGGLGG AGLGGLGGAG 240
  241 LGGFGGANNA TAGIAGAAPV DQTAAANTIQ NLLNNLGGAG FGAGLGDAGL GAGLGGAASP 300
  301 PAPAQDTRPP EERYAEQLSQ LNEMGFVDFE RNVQALRRSG GNVQGAIESL LSDL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run dam1 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..354] PSI-BLAST 43.0 Structure of the DNA repair protein hHR23a

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  3.35791544110308 bayes_pls_golite062009
  • damaged DNA binding
    		•  2.85253974565598 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  1.83465130904364 bayes_pls_golite062009
  • protein binding
    		•  1.76858817153382 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.42747465816672 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.32707653701567 bayes_pls_golite062009
  • DNA binding
    		•  1.22622447288034 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  1.16468510691469 bayes_pls_golite062009
  • tubulin binding
    		•  1.11505425062041 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.919595189902044 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.907853439770547 bayes_pls_golite062009
  • microtubule binding
    		•  0.84012258724586 bayes_pls_golite062009
  • hydrolase activity
    		•  0.247201449341942 bayes_pls_golite062009
  • polyubiquitin binding
    		•  0.126322128629172 bayes_pls_golite062009
  • peptidase activity
    		•  0.0141774634963068 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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