| Protein: | dph1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 354 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dph1.
| Description | E-value | Query Range |
Subject Range |
|
|
191.0 | [0..4] | [353..1] |
|
|
190.0 | [0..4] | [354..1] |
|
|
186.0 | [0..4] | [353..1] |
|
|
182.0 | [0..4] | [354..1] |
|
|
179.0 | [0..4] | [354..1] |
|
|
177.0 | [0..4] | [352..3] |
|
Region A: Residues: [1-354] |
1 11 21 31 41 51
| | | | | |
1 MTNISLTIKA ANDQKYAVTV DSESSVLALK EAIAPVADIE KERQRLIYAG RVLKDEESLK 60
61 TYKIQDGHSI HLVKTLGQNP AAAATNVSDR TQQVPTNIQA GQGANNPLAN LTSARYAGFN 120
121 IPMPSASMFG PNPENPVPPS TEELANMLSN PMVQSSINEM FSNPQMLDMI INSSPHLRNA 180
181 PPYVRQMMQS PEFRRAMTDP DTMRQMAQLH QQMGAAGIDP MSLMGGGLGG AGLGGLGGAG 240
241 LGGFGGANNA TAGIAGAAPV DQTAAANTIQ NLLNNLGGAG FGAGLGDAGL GAGLGGAASP 300
301 PAPAQDTRPP EERYAEQLSQ LNEMGFVDFE RNVQALRRSG GNVQGAIESL LSDL
|
| Detection Method: |  |
| Confidence: | 43.0 |
| Match: | 1oqyA |
| Description: | Structure of the DNA repair protein hHR23a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.35791544110308 | bayes_pls_golite062009 |
| damaged DNA binding | 2.85253974565598 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.83465130904364 | bayes_pls_golite062009 |
| protein binding | 1.76858817153382 | bayes_pls_golite062009 |
| transcription regulator activity | 1.42747465816672 | bayes_pls_golite062009 |
| nucleic acid binding | 1.32707653701567 | bayes_pls_golite062009 |
| DNA binding | 1.22622447288034 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.16468510691469 | bayes_pls_golite062009 |
| tubulin binding | 1.11505425062041 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.919595189902044 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.907853439770547 | bayes_pls_golite062009 |
| microtubule binding | 0.84012258724586 | bayes_pls_golite062009 |
| hydrolase activity | 0.247201449341942 | bayes_pls_golite062009 |
| polyubiquitin binding | 0.126322128629172 | bayes_pls_golite062009 |
| peptidase activity | 0.0141774634963068 | bayes_pls_golite062009 |
