YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dph1
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNISLTIKA ANDQKYAVTV DSESSVLALK EAIAPVADIE KERQRLIYAG RVLKDEESLK  60
   61 TYKIQDGHSI HLVKTLGQNP AAAATNVSDR TQQVPTNIQA GQGANNPLAN LTSARYAGFN 120
  121 IPMPSASMFG PNPENPVPPS TEELANMLSN PMVQSSINEM FSNPQMLDMI INSSPHLRNA 180
  181 PPYVRQMMQS PEFRRAMTDP DTMRQMAQLH QQMGAAGIDP MSLMGGGLGG AGLGGLGGAG 240
  241 LGGFGGANNA TAGIAGAAPV DQTAAANTIQ NLLNNLGGAG FGAGLGDAGL GAGLGGAASP 300
  301 PAPAQDTRPP EERYAEQLSQ LNEMGFVDFE RNVQALRRSG GNVQGAIESL LSDL

Type	Start	End	Confidence
Cytoplasmic	1	220	0.84
Transmembrane Helix	221	244	0.73
Non-Cytoplasmic	245	277	0.83
Transmembrane Helix	278	298	0.73
Cytoplasmic	299	354	0.76