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Protein Overview: rpb7

General Information:
Name(s) found: rpb7 / SPACUNK4.06c [Sanger Pombe]
Description(s) found:
Found 25 descriptions.
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  • DNA-directed RNA polymerase complex II subunit Rpb7 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 172 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    DNA-directed RNA polymerase II, holoenzyme [ICLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: transcription from RNA polymerase II promoter [ICLink to PubMed article]
    RNA processing [RCALink to PubMed article]
    Molecular Function: DNA-directed RNA polymerase activity [IDALink to PubMed article]
    protein binding [IPILink to PubMed articleLink to PubMed article]
    RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFFLKELSL TISLHPSYFG PRMQDYLKAK LLADVEGTCS GQYGYIICVL DSNTIDIDKG  60
   61 RVVPGQGFAE FEVKYRAVLW RPFRGEVVDA IVTTVNKMGF FANIGPLNVF VSSHLVPPDM 120
  121 KFDPTANPPN YSGEDQVIEK GSNVRLKIVG TRTDATEIFA IATMKEDYLG VL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..172] PSI-BLAST 32.0 No description for 2b8kG was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed RNA polymerase activity
    		•  5.58573473432218 bayes_pls_golite062009
  • RNA polymerase activity
    		•  5.58573473432218 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  5.1118741250402 bayes_pls_golite062009
  • structural molecule activity
    		•  4.51553901145182 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.29626483284963 bayes_pls_golite062009
  • RNA binding
    		•  3.99161318590718 bayes_pls_golite062009
  • ribonuclease activity
    		•  3.83159232224897 bayes_pls_golite062009
  • DNA binding
    		•  3.53568546959418 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  3.34659726705133 bayes_pls_golite062009
  • binding
    		•  2.83465364476231 bayes_pls_golite062009
    		• 2.80746531284205 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  2.58106651553389 bayes_pls_golite062009
  • exoribonuclease activity
    		•  2.41262897171619 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  2.38378389593693 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.10110937001387 bayes_pls_golite062009
  • transferase activity
    		•  2.03373182784225 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.81524862921454 bayes_pls_golite062009
  • mRNA binding
    		•  1.660993824641 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  1.62996999055328 bayes_pls_golite062009
  • translation regulator activity
    		•  1.46320772716954 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  1.40718318783582 bayes_pls_golite062009
  • translation initiation factor activity
    		•  1.27539679024898 bayes_pls_golite062009
  • protein binding
    		•  1.20309946451799 bayes_pls_golite062009
  • transcription activator activity
    		•  1.09079153283893 bayes_pls_golite062009
  • transcription factor activity
    		•  0.937752547283357 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.85691075793641 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  0.83268201349295 bayes_pls_golite062009
  • hydrolase activity
    		•  0.724860465280978 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.583085644017496 bayes_pls_golite062009
  • nuclease activity
    		•  0.57381531077345 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.474251377131502 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.47336621289748 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.47336621289748 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.223941674251642 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle