YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: ssb3

General Information:
Name(s) found: ssb3 / SPCC23B6.05c [Sanger Pombe]
Description(s) found:
SHOW ONLY BEST
  • pir||T41245 single-stranded DNA binding protein 12K chain [validated] - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|5640149|emb|CAB51564.1| DNA replication factor A subunit Ssb3 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|2498850|sp|Q92374.1|RFA3_SCHPO RecName: Full=Replication factor A protein 3; AltName: Full=Single-stranded DNA-binding protein P12 subunit [NCBI NR]
  • gi|19075628|ref|NP_588128.1| DNA replication factor A subunit Ssb3 [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • gi|1502417|gb|AAC49439.1| single-stranded DNA binding protein p12 subunit [NCBI NR]
  • DNA replication factor A subunit Ssb3 [Sanger Pombe]
  • Replication factor A protein 3 OS=Schizosaccharomyces pombe GN=ssb3 PE=1 SV=1 [Swiss-Prot]
  • REPLICATION FACTOR-A PROTEIN 3; SIMILAR TO S. CEREVISIAE RPA3: P17477;Q92374; [pompepVF.fasta]
  • REPLICATION FACTOR-A PROTEIN 3: Q92374; [pompepV13]
  • Replication factor-A protein 3 (Single-stranded DNA-binding protein P12 subunit) [pompep4896]
  • |ssb3|rpa3|replication factor-a protein 3 [pompepnew.fasta]
  • |ssb3|rpa3|DNA replication factor A complex (subunit 3)|Schizosaccharomyces pombe|chr 3|||Manual [pombe041504.fasta]
  • replication factor-a protein 3 [Schizosaccharomyces pombe]gi|5640149|emb|CAB51564.1| ssb3 [Schizosaccharomyces pombe]gi|2498850|sp|Q92374|RFA3_SCHPO Replication factor-A protein 3 (Single-stranded DNA-binding protein P12 subunit)gi|1502417|gb|AAC49439. [nrdb_11152004_Chlamydomonas]
  • |ssb3|rpa3|DNA replication factor A complex |Schizosaccharomyces pombe|chr 3|||Manual [pompep2242005.fasta]
  • (Q92374) Replication factor-A protein 3 (Single-stranded DNA-binding protein P12 subunit) [pompep4896_normal_reversed]
  • |ssb3|rpa3|DNA replication factor A subunit Ssb3|Schizosaccharomyces pombe|chr 3|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPCC23B6.05c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • single-stranded DNA binding protein p12 subunit [nr-271106-contam.fasta]
  • hypothetical protein SPCC23B6.05c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • DNA replication factor A subunit Ssb3 [Schizosaccharomyces pombe 972h-] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • Replication factor A protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssb3 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 104 amino acids

    Gene Ontology:
    Cellular Component: chromosome, telomeric region [ISSLink to PubMed article]
    nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    DNA replication factor A complex [IDALink to PubMed article]
    Biological Process: DNA repair [ISSLink to PubMed article]
    DNA-dependent DNA replication [ISSLink to PubMed article]
    DNA recombination [ISSLink to PubMed article]
    telomere maintenance [NASLink to PubMed article]
    DNA replication, synthesis of RNA primer [ISSLink to PubMed article]
    Molecular Function: single-stranded DNA binding [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERPTPRVTK DMLPECSGKT VRIVGKANQV EGETAKVDSN GSFDMHLTVD NTLEPNHFYE  60
   61 FVVSVKPDSS VQLLTCVDFG TDIDMEVYQK LVLFSHKYNS LFFE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..104] PSI-BLAST 30.09691 No description for 2pi2E was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • telomeric DNA binding
    		•  7.07761964836826 bayes_pls_golite062009
  • single-stranded telomeric DNA binding
    		•  6.04637014849887 bayes_pls_golite062009
  • telomerase inhibitor activity
    		•  4.06762092339715 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.02967008021862 bayes_pls_golite062009
  • DNA binding
    		•  3.62735703519187 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  3.59212997362902 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  3.53214384646348 bayes_pls_golite062009
  • binding
    		•  2.63617204791771 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.20239961025491 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  2.13063800565247 bayes_pls_golite062009
  • structural molecule activity
    		•  1.9177190829469 bayes_pls_golite062009
  • ribonuclease activity
    		•  1.19236946227657 bayes_pls_golite062009
  • DNA helicase activity
    		•  1.12203697857261 bayes_pls_golite062009
  • transcription factor activity
    		•  1.05816813143865 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.86170694706755 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.638831894247026 bayes_pls_golite062009
  • nuclease activity
    		•  0.57381531077345 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.378383789953688 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.325774164899685 bayes_pls_golite062009
  • four-way junction helicase activity
    		•  0.31769813397725 bayes_pls_golite062009
  • translation regulator activity
    		•  0.31332179848255 bayes_pls_golite062009
  • RNA binding
    		•  0.31028563542112 bayes_pls_golite062009
  • exonuclease activity
    		•  0.28313884527829 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.263197317040851 bayes_pls_golite062009
  • translation initiation factor activity
    		•  0.2080607201312 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.125256208482441 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.109774918833391 bayes_pls_golite062009
  • RNA polymerase activity
    		•  0.10868826895563 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  0.10868826895563 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.0954216620147701 bayes_pls_golite062009
  • protein binding
    		•  0.0528188351789111 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.0179535526984695 bayes_pls_golite062009
  • helicase activity
    		•  0.0121541775159524 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle