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Protein Overview: pabp

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..73] PSI-BLAST 18.0 CG8781 protein
2 View Details [74..254] PSI-BLAST 50.221849 Poly(A)-binding protein
3 View Details [255..348] PSI-BLAST 6.69897 Splicing factor U2AF 65 KDa subunit
4 View Details [349..453] FFAS03 4.63 No description for 2f3jA was found.
5 View Details [454..653] PSI-BLAST 32.522879 poly(A) binding protein

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2
Term Confidence Notes
  • RNA binding
  • 6.73097473547076 bayes_pls_golite062009
  • 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
  • 5.29759606920196 bayes_pls_golite062009
  • nucleic acid binding
  • 4.92126426323641 bayes_pls_golite062009
  • structural molecule activity
  • 4.28696884073791 bayes_pls_golite062009
  • snRNA binding
  • 4.06596327298973 bayes_pls_golite062009
  • binding
  • 3.64400841800969 bayes_pls_golite062009
  • translation initiation factor activity
  • 3.27900316559423 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 3.11990160533699 bayes_pls_golite062009
  • U1 snRNA binding
  • 3.02511982045347 bayes_pls_golite062009
  • single-stranded RNA binding
  • 2.93798024346416 bayes_pls_golite062009
  • transcription regulator activity
  • 2.18211199677674 bayes_pls_golite062009
  • DNA binding
  • 1.98418556946403 bayes_pls_golite062009
  • U2 snRNA binding
  • 1.34078165372485 bayes_pls_golite062009
  • protein binding
  • 1.12215421354121 bayes_pls_golite062009
  • transcription factor activity
  • 1.07843408116687 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.824614388276642 bayes_pls_golite062009
  • transporter activity
  • 0.417047632648771 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.383589644462932 bayes_pls_golite062009
  • translation regulator activity
  • 0.38120065819101 bayes_pls_golite062009
  • transmembrane transporter activity
  • 0.288804044686487 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
  • 0.128616879457381 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
  • 0.00171911393626201 bayes_pls_golite062009
    3
    Term Confidence Notes
  • RNA binding
  • 6.73097473547076 bayes_pls_golite062009
  • 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
  • 5.29759606920196 bayes_pls_golite062009
  • nucleic acid binding
  • 4.92126426323641 bayes_pls_golite062009
  • structural molecule activity
  • 4.28696884073791 bayes_pls_golite062009
  • snRNA binding
  • 4.06596327298973 bayes_pls_golite062009
  • binding
  • 3.64400841800969 bayes_pls_golite062009
  • translation initiation factor activity
  • 3.27900316559423 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 3.11990160533699 bayes_pls_golite062009
  • U1 snRNA binding
  • 3.02511982045347 bayes_pls_golite062009
  • single-stranded RNA binding
  • 2.93798024346416 bayes_pls_golite062009
  • transcription regulator activity
  • 2.18211199677674 bayes_pls_golite062009
  • DNA binding
  • 1.98418556946403 bayes_pls_golite062009
  • U2 snRNA binding
  • 1.34078165372485 bayes_pls_golite062009
  • protein binding
  • 1.12215421354121 bayes_pls_golite062009
  • transcription factor activity
  • 1.07843408116687 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.824614388276642 bayes_pls_golite062009
  • transporter activity
  • 0.417047632648771 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.383589644462932 bayes_pls_golite062009
  • translation regulator activity
  • 0.38120065819101 bayes_pls_golite062009
  • transmembrane transporter activity
  • 0.288804044686487 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
  • 0.128616879457381 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
  • 0.00171911393626201 bayes_pls_golite062009
    4 No functions predicted.
    5
    Term Confidence Notes
  • RNA binding
  • 5.69788763665792 bayes_pls_golite062009
  • mRNA binding
  • 5.31297072316889 bayes_pls_golite062009
  • single-stranded RNA binding
  • 4.51056428709072 bayes_pls_golite062009
  • nucleic acid binding
  • 3.78909647605682 bayes_pls_golite062009
  • eukaryotic initiation factor 4G binding
  • 3.4111148675327 bayes_pls_golite062009
  • binding
  • 2.76167454154417 bayes_pls_golite062009
  • poly(A) RNA binding
  • 2.66269581586161 bayes_pls_golite062009
  • poly-purine tract binding
  • 2.20136693536924 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
  • 1.19350242454642 bayes_pls_golite062009
  • small conjugating protein ligase activity
  • 1.14692713780316 bayes_pls_golite062009
  • protein binding
  • 0.856075580719879 bayes_pls_golite062009
  • ligase activity
  • 0.38737123012383 bayes_pls_golite062009
  • catalytic activity
  • 0.287695754348243 bayes_pls_golite062009
  • acid-amino acid ligase activity
  • 0.223805219849164 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle