| Protein: | pabp |
| Organism: | Schizosaccharomyces pombe |
| Length: | 653 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pabp.
| Description | E-value | Query Range |
Subject Range |
|
|
500.0 | [0..72] | [651..3] |
|
|
498.0 | [0..72] | [651..3] |
|
|
496.0 | [0..72] | [651..3] |
|
Region A: Residues: [1-73] |
1 11 21 31 41 51
| | | | | |
1 MPSTDLKKQA DAAVESDVNT NNEAVESSTK EESSNTPSTE TQPEKKAEEP EAAAEPSEST 60
61 STPTNASSVA TPS
|
| Detection Method: |  |
| Confidence: | 18.0 |
| Match: | 1hl6A |
| Description: | CG8781 protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [74-254] |
1 11 21 31 41 51
| | | | | |
1 GTAPTSASLY VGELDPSVTE AMLFELFNSI GPVASIRVCR DAVTRRSLGY AYVNFHNMED 60
61 GEKALDELNY TLIKGRPCRI MWSQRDPSLR KMGTGNVFIK NLDPAIDNKA LHDTFSAFGK 120
121 ILSCKVAVDE LGNAKGYGFV HFDSVESANA AIEHVNGMLL NDKKVYVGHH VSRRERQSKV 180
181 E
|
| Detection Method: | |
| Confidence: | 50.221849 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| structural molecule activity | 4.28696884073791 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| translation initiation factor activity | 3.27900316559423 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| U2 snRNA binding | 1.34078165372485 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| transporter activity | 0.417047632648771 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.288804044686487 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00171911393626201 | bayes_pls_golite062009 |
|
Region A: Residues: [255-348] |
1 11 21 31 41 51
| | | | | |
1 ALKANFTNVY IKNLDTEITE QEFSDLFGQF GEITSLSLVK DQNDKPRGFG FVNYANHECA 60
61 QKAVDELNDK EYKGKKLYVG RAQKKHEREE ELRK
|
| Detection Method: | |
| Confidence: | 6.69897 |
| Match: | 1o0pA |
| Description: | Splicing factor U2AF 65 KDa subunit |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| structural molecule activity | 4.28696884073791 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| translation initiation factor activity | 3.27900316559423 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| U2 snRNA binding | 1.34078165372485 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| transporter activity | 0.417047632648771 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.288804044686487 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00171911393626201 | bayes_pls_golite062009 |
|
Region A: Residues: [349-453] |
1 11 21 31 41 51
| | | | | |
1 RYEQMKLEKM NKYQGVNLFI KNLQDEVDDE RLKAEFSAFG TITSAKIMTD EQGKSKGFGF 60
61 VCYTTPEEAN KAVTEMNQRM LAGKPLYVAL AQRKEVRRSQ LEAQI
|
| Detection Method: | |
| Confidence: | 4.63 |
| Match: | 2f3jA |
| Description: | No description for 2f3jA was found. |
|
Region A: Residues: [454-653] |
1 11 21 31 41 51
| | | | | |
1 QARNQFRLQQ QVAAAAGIPA VQYGATGPLI YGPGGYPIPA AVNGRGMPMV PGHNGPMPMY 60
61 PGMPTQFPAG GPAPGYPGMN ARGPVPAQGR PMMMPGSVPS AGPAEAEAVP AVPGMPERFT 120
121 AADLAAVPEE SRKQVLGELL YPKVFVREEK LSGKITGMLL EMPNSELLEL LEDDSALNER 180
181 VNEAIGVLQE FVDQEPGFTE
|
| Detection Method: | |
| Confidence: | 32.522879 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.69788763665792 | bayes_pls_golite062009 |
| mRNA binding | 5.31297072316889 | bayes_pls_golite062009 |
| single-stranded RNA binding | 4.51056428709072 | bayes_pls_golite062009 |
| nucleic acid binding | 3.78909647605682 | bayes_pls_golite062009 |
| eukaryotic initiation factor 4G binding | 3.4111148675327 | bayes_pls_golite062009 |
| binding | 2.76167454154417 | bayes_pls_golite062009 |
| poly(A) RNA binding | 2.66269581586161 | bayes_pls_golite062009 |
| poly-purine tract binding | 2.20136693536924 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.19350242454642 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.14692713780316 | bayes_pls_golite062009 |
| protein binding | 0.856075580719879 | bayes_pls_golite062009 |
| ligase activity | 0.38737123012383 | bayes_pls_golite062009 |
| catalytic activity | 0.287695754348243 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.223805219849164 | bayes_pls_golite062009 |
