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Protein Overview: chp1

General Information:
Name(s) found: chp1 / SPAC18G6.02c [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • chromodomain protein Chp1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 960 amino acids

    Gene Ontology:
    Cellular Component: mating-type region heterochromatin [IDALink to PubMed article]
    nucleus [IDALink to PubMed article]
    nuclear telomeric heterochromatin [IDALink to PubMed article]
    RITS complex [IDALink to PubMed article]
    spindle pole body [IDALink to PubMed article]
    chromosome, centromeric region [IDALink to PubMed article]
    centromeric heterochromatin [IDALink to PubMed article]
    Biological Process: regulation of histone methylation [IMPLink to PubMed article]
    chromatin remodeling [RCALink to PubMed article]
    chromatin silencing at centromere [TASLink to PubMed article]
    mitotic sister chromatid segregation [IGILink to PubMed article][IMPLink to PubMed article]
    chromatin assembly or disassembly [IEA]
    [NOT]chromatin silencing at silent mating-type cassette [IMPLink to PubMed article]
    [NOT]chromatin silencing at telomere [IMPLink to PubMed article]
    cellular protein localization [IGILink to PubMed articleLink to PubMed articleLink to PubMed article]
    chromatin silencing by small RNA [IGILink to PubMed article][IMPLink to PubMed article]
    Molecular Function: DNA binding [IEA]
    protein binding [IPILink to PubMed article]
    RNA binding [RCALink to PubMed article]
    chromatin binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSVKPLPDI DSNEGETDAD VYEVEDILAD RVNKNGINEY YIKWAGYDWY DNTWEPEQNL  60
   61 FGAEKVLKKW KKRKKLIAKG LLEPFDAEDN EAKKMKREKE ILRQQRQKRK SELTQLSQKV 120
  121 KEKFKKMRKK PARRIVTIAN DEEEEDDQTM DEDAFERKSM QGELKERNLT DKTSTLSTSF 180
  181 GETSPDVNPF YLSEWPTVTD SILLSKSLSS DAIPLKNGEI KSTMLMPSDS DNSVPGIQNS 240
  241 NNLENTGAFV ENANSPQSNT PLSTFRHSSP LSLSPVITSD NDVANSLFFS NSTPLPSSLK 300
  301 IKKEAPKLET HTILVSDNSG SLTKQDILSY FAFIKGNIEV FFLKSPKKDK VCNMAYIQFD 360
  361 SIEQAKLAYD KGHPSWHVTL VKGKISTDME ECKVSKSILK TTPSKKANAR SVSFTQTTTD 420
  421 TLSESEKFAS NVDLDENFDF NVNVTNEDAK QLKKSVIGSS WTTVNNDWNS VSKSDQTFEN 480
  481 DGASKVVPAG NITLNSDNSL HHSISESEDL SSASTLSDYF RFVLRVGKSL YYAGELSFDI 540
  541 SKLKAETEHQ QLLRSLVSCK QVDVLRFVTS QYLEVFGTCL TKVLSGSLCI RSDVDMTHFK 600
  601 NILNRGNGAG IVLGSNYTLL LFTEDNNALM NLYDCQGQSN SPFWMVIFEP LESILVEWSA 660
  661 KNLRPKKPYH KSQSYLSYLL QLGHIDLHKI GAFQATQILI VSKQPSPEAE ELEDTFREAA 720
  721 IPTFRGLEIP ESLFLSQNVF VFLNVSLEDD FDQLQFLTLA KRKSCKFFLF GLSLPLKSPN 780
  781 DSHVGTDFKK NNEPLDKLTY SQYLRPMFPK GGVVSVTLSA LIKTPRLLEL ISPFLEIKKD 840
  841 SWILILPPSI VDMVKSYFVT NNPDKSLLEI QNLLNTLQRY LTNPALKNVT LYQDWDIVID 900
  901 DSADVSLAST LQLYQKKNYD KYRRFVLIHE LKNELTPVNG LDIVDYDEFK ETFMRAIGLK 960
  961

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..183] PSI-BLAST 14.69897 Tandem chromodomains of human CHD1 complexed with Histone H3 Tail containing trimethyllysine 4 and dimethylarginine 2
    2 View Details [184..434] deduced N/A No confident structure predictions are available.
    3 View Details [435..586] MSA 8.147994 View MSA. No confident structure predictions are available.
    4 View Details [587..779] deduced N/A No confident structure predictions are available.
    5 View Details [780..960] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription repressor activity
    		•  4.08500855631983 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.64390820819794 bayes_pls_golite062009
  • methylated histone residue binding
    		•  3.42338304360938 bayes_pls_golite062009
  • chromatin binding
    		•  3.1924157640698 bayes_pls_golite062009
  • binding
    		•  3.06758476214113 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.19167058827256 bayes_pls_golite062009
  • DNA binding
    		•  2.05514577638135 bayes_pls_golite062009
  • histone binding
    		•  2.00388175060339 bayes_pls_golite062009
  • protein binding
    		•  1.61683263008775 bayes_pls_golite062009
  • general transcriptional repressor activity
    		•  0.75184432495983 bayes_pls_golite062009
  • RNA binding
    		•  0.503214578033104 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.294457188332415 bayes_pls_golite062009
  • catalytic activity
    		•  0.14067200158938 bayes_pls_golite062009
  • transcription activator activity
    		•  0.136090220479238 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle