| Protein: | chp1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 960 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for chp1.
| Description | E-value | Query Range |
Subject Range |
|
|
387.0 | [0..49] | [590..248] |
|
Region A: Residues: [1-183] |
1 11 21 31 41 51
| | | | | |
1 MVSVKPLPDI DSNEGETDAD VYEVEDILAD RVNKNGINEY YIKWAGYDWY DNTWEPEQNL 60
61 FGAEKVLKKW KKRKKLIAKG LLEPFDAEDN EAKKMKREKE ILRQQRQKRK SELTQLSQKV 120
121 KEKFKKMRKK PARRIVTIAN DEEEEDDQTM DEDAFERKSM QGELKERNLT DKTSTLSTSF 180
181 GET
|
| Detection Method: |  |
| Confidence: | 14.69897 |
| Match: | 2b2uA |
| Description: | Tandem chromodomains of human CHD1 complexed with Histone H3 Tail containing trimethyllysine 4 and dimethylarginine 2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription repressor activity | 4.08500855631983 | bayes_pls_golite062009 |
| transcription regulator activity | 3.64390820819794 | bayes_pls_golite062009 |
| methylated histone residue binding | 3.42338304360938 | bayes_pls_golite062009 |
| chromatin binding | 3.1924157640698 | bayes_pls_golite062009 |
| binding | 3.06758476214113 | bayes_pls_golite062009 |
| nucleic acid binding | 2.19167058827256 | bayes_pls_golite062009 |
| DNA binding | 2.05514577638135 | bayes_pls_golite062009 |
| histone binding | 2.00388175060339 | bayes_pls_golite062009 |
| protein binding | 1.61683263008775 | bayes_pls_golite062009 |
| general transcriptional repressor activity | 0.75184432495983 | bayes_pls_golite062009 |
| RNA binding | 0.503214578033104 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.294457188332415 | bayes_pls_golite062009 |
| catalytic activity | 0.14067200158938 | bayes_pls_golite062009 |
| transcription activator activity | 0.136090220479238 | bayes_pls_golite062009 |
|
Region A: Residues: [184-434] |
1 11 21 31 41 51
| | | | | |
1 SPDVNPFYLS EWPTVTDSIL LSKSLSSDAI PLKNGEIKST MLMPSDSDNS VPGIQNSNNL 60
61 ENTGAFVENA NSPQSNTPLS TFRHSSPLSL SPVITSDNDV ANSLFFSNST PLPSSLKIKK 120
121 EAPKLETHTI LVSDNSGSLT KQDILSYFAF IKGNIEVFFL KSPKKDKVCN MAYIQFDSIE 180
181 QAKLAYDKGH PSWHVTLVKG KISTDMEECK VSKSILKTTP SKKANARSVS FTQTTTDTLS 240
241 ESEKFASNVD L
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [435-586] |
1 11 21 31 41 51
| | | | | |
1 DENFDFNVNV TNEDAKQLKK SVIGSSWTTV NNDWNSVSKS DQTFENDGAS KVVPAGNITL 60
61 NSDNSLHHSI SESEDLSSAS TLSDYFRFVL RVGKSLYYAG ELSFDISKLK AETEHQQLLR 120
121 SLVSCKQVDV LRFVTSQYLE VFGTCLTKVL SG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [587-779] |
1 11 21 31 41 51
| | | | | |
1 SLCIRSDVDM THFKNILNRG NGAGIVLGSN YTLLLFTEDN NALMNLYDCQ GQSNSPFWMV 60
61 IFEPLESILV EWSAKNLRPK KPYHKSQSYL SYLLQLGHID LHKIGAFQAT QILIVSKQPS 120
121 PEAEELEDTF REAAIPTFRG LEIPESLFLS QNVFVFLNVS LEDDFDQLQF LTLAKRKSCK 180
181 FFLFGLSLPL KSP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [780-960] |
1 11 21 31 41 51
| | | | | |
1 NDSHVGTDFK KNNEPLDKLT YSQYLRPMFP KGGVVSVTLS ALIKTPRLLE LISPFLEIKK 60
61 DSWILILPPS IVDMVKSYFV TNNPDKSLLE IQNLLNTLQR YLTNPALKNV TLYQDWDIVI 120
121 DDSADVSLAS TLQLYQKKNY DKYRRFVLIH ELKNELTPVN GLDIVDYDEF KETFMRAIGL 180
181 K
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
