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Protein Overview: FBpp0310183, CG1...

General Information:
Name(s) found: FBpp0310183 [FlyBase]
CG15220-PA / FBpp0073380 [FlyBase]
Description(s) found:
Found 28 descriptions.
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  • type=protein; loc=X:complement(11509378..11509479,11509551..11509787); ID=FBpp0310183; name=RPA3-PB; parent=FBgn0266421,FBtr0343586; dbxref=FlyBase:FBpp0310183,FlyBase_Annotation_IDs:CG15220-PB; MD5=62f468dae64432236a7dd95d7cce3b32; length=112; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG15220 (CG15220, FBgn0030322). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:11509261..11509873. It has the cytological map location 10D1. Based on sequence similarity, it is predicted to have molecular function</span>: DNA binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: DNA replication. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 112 amino acids

    Gene Ontology:
    Cellular Component: DNA replication factor A complex [NAS]
    Biological Process: DNA replication [ISS]
    Molecular Function: DNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAFDPRSII NGGMLKQFSG QTVSIMVRVE SVAGSTLLAS STDNHKLKIN LPGELGAAEG  60
   61 AWVEVIGVPH GADTLRAKEV IEFGGENIDF DKDGYNGLSH LINNVKAFYR SG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..112] PSI-BLAST 38.39794 No description for 2pi2E was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  3.27576062206528 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  3.06066809614422 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  3.0183551365402 bayes_pls_golite062009
  • DNA binding
    		•  2.56243510083541 bayes_pls_golite062009
  • binding
    		•  2.24181355929217 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  2.13063800565247 bayes_pls_golite062009
  • structural molecule activity
    		•  1.9177190829469 bayes_pls_golite062009
  • telomeric DNA binding
    		•  1.7847835613194 bayes_pls_golite062009
  • single-stranded telomeric DNA binding
    		•  1.48033977789232 bayes_pls_golite062009
  • telomerase inhibitor activity
    		•  1.25988289474883 bayes_pls_golite062009
  • DNA helicase activity
    		•  1.12203697857261 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.756094573447167 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.638831894247026 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.62994126331969 bayes_pls_golite062009
  • nuclease activity
    		•  0.57381531077345 bayes_pls_golite062009
  • translation regulator activity
    		•  0.515576958825022 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.468402630523277 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.325774164899685 bayes_pls_golite062009
  • exonuclease activity
    		•  0.28313884527829 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.21650406007586 bayes_pls_golite062009
  • translation initiation factor activity
    		•  0.2080607201312 bayes_pls_golite062009
  • RNA polymerase activity
    		•  0.10868826895563 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  0.10868826895563 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.0954216620147701 bayes_pls_golite062009
  • transcription factor activity
    		•  0.0591886273075271 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.0179535526984695 bayes_pls_golite062009
  • helicase activity
    		•  0.0121541775159524 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle