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Protein Overview: heph-PB, heph-PF...

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..178] PSI-BLAST 15.39794 Solution structure of Polypyrimidine Tract Binding protein RBD1 complexed with CUCUCU RNA
2 View Details [179..393] FFAS03 4.7 NMR Structure of RRM2 from Human Polypyrimidine Tract Binding Protein Isoform 1 (PTB1)
3 View Details [394..608] PSI-BLAST 39.30103 Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • RNA binding
  • 6.73097473547076 bayes_pls_golite062009
  • 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
  • 5.29759606920196 bayes_pls_golite062009
  • nucleic acid binding
  • 3.81920018903278 bayes_pls_golite062009
  • binding
  • 3.64400841800969 bayes_pls_golite062009
  • snRNA binding
  • 3.28448936696877 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 3.11990160533699 bayes_pls_golite062009
  • single-stranded RNA binding
  • 2.93798024346416 bayes_pls_golite062009
  • U1 snRNA binding
  • 2.26303528058407 bayes_pls_golite062009
  • structural molecule activity
  • 1.29928829870122 bayes_pls_golite062009
  • protein binding
  • 1.12215421354121 bayes_pls_golite062009
  • transcription regulator activity
  • 1.07788694919471 bayes_pls_golite062009
  • DNA binding
  • 0.978604858165557 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.591700155096213 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
  • 0.425042944899091 bayes_pls_golite062009
  • transcription factor activity
  • 0.234742017105535 bayes_pls_golite062009
  • snoRNA binding
  • 0.0568636182001701 bayes_pls_golite062009
    2
    Term Confidence Notes
  • 6.40066880991253 bayes_pls_golite062009
  • RNA binding
  • 6.32219487559982 bayes_pls_golite062009
  • mRNA binding
  • 4.87640532914983 bayes_pls_golite062009
  • nucleic acid binding
  • 3.55052626921306 bayes_pls_golite062009
  • binding
  • 3.48033873254013 bayes_pls_golite062009
  • snRNA binding
  • 2.99850361909067 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 2.7133834347239 bayes_pls_golite062009
  • single-stranded RNA binding
  • 2.55628738360472 bayes_pls_golite062009
  • U1 snRNA binding
  • 1.97699928565988 bayes_pls_golite062009
  • structural molecule activity
  • 1.30816853575581 bayes_pls_golite062009
  • transcription regulator activity
  • 1.10029555513317 bayes_pls_golite062009
  • protein binding
  • 1.05805521997665 bayes_pls_golite062009
  • DNA binding
  • 0.984725930713243 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
  • 0.423310828232948 bayes_pls_golite062009
  • transcription factor activity
  • 0.255891228964936 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.229644510503376 bayes_pls_golite062009
    3
    Term Confidence Notes
  • RNA binding
  • 6.73097473547076 bayes_pls_golite062009
  • 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
  • 5.29759606920196 bayes_pls_golite062009
  • nucleic acid binding
  • 3.81920018903278 bayes_pls_golite062009
  • binding
  • 3.64400841800969 bayes_pls_golite062009
  • snRNA binding
  • 3.28448936696877 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 3.11990160533699 bayes_pls_golite062009
  • single-stranded RNA binding
  • 2.93798024346416 bayes_pls_golite062009
  • U1 snRNA binding
  • 2.26303528058407 bayes_pls_golite062009
  • structural molecule activity
  • 1.29928829870122 bayes_pls_golite062009
  • protein binding
  • 1.12215421354121 bayes_pls_golite062009
  • transcription regulator activity
  • 1.07788694919471 bayes_pls_golite062009
  • DNA binding
  • 0.978604858165557 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.591700155096213 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
  • 0.425042944899091 bayes_pls_golite062009
  • transcription factor activity
  • 0.234742017105535 bayes_pls_golite062009
  • snoRNA binding
  • 0.0568636182001701 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle