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Protein Overview: atl-PB, atl-PA, ...

General Information:
Name(s) found: FBpp0311413 [FlyBase]
atl-PB / FBpp0084037 [FlyBase]
atl-PA / FBpp0084036 [FlyBase]
Description(s) found:
Found 42 descriptions.
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  • type=protein; loc=3R:join(20457619..20457813,20457879..20459092,20459155..20459221,20459280..20459429); ID=FBpp0311413; name=atl-PC; parent=FBgn0039213,FBtr0345218; dbxref=FlyBase:FBpp0311413,FlyBase_Annotation_IDs:CG6668-PC; MD5=823b051da040be29f55533fad9a30308; length=541; release=r5.56; species=Dmel; [FlyBase]
  • The gene atlastin is referred to in FlyBase by the symbol Dmel\atl (CG6668, FBgn0039213). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:20451397..20460436. It has the cytological map location 96A13. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: GTP binding; GTPase activity. There is experimental evidence that it is involved in the biological process</span>: regulation of microtubule depolymerization; neuromuscular junction development; regulation of synaptic growth at neuromuscular junction. 17 alleles are reported. The phenotypes of these alleles are annotated with: NMJ bouton; oocyte; postsynaptic membrane; dopaminergic neuron; abdominal 2 ventral longitudinal muscle 4; embryonic/larval somatic muscle; abdominal 2 ventral longitudinal muscle 3. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • The gene atlastin is referred to in FlyBase by the symbol Dmel\atl (CG6668, FBgn0039213). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:20451397..20460436. It has the cytological map location 96A13. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: GTP binding; GTPase activity. There is experimental evidence that it is involved in the biological process</span>: regulation of microtubule depolymerization; neuromuscular junction development; regulation of synaptic growth at neuromuscular junction. 17 alleles are reported. The phenotypes of these alleles are annotated with: NMJ bouton; oocyte; postsynaptic membrane; dopaminergic neuron; abdominal 2 ventral longitudinal muscle 4; embryonic/larval somatic muscle; abdominal 2 ventral longitudinal muscle 3. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 541 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDA]
    endoplasmic reticulum [IDA]
    Golgi apparatus [IDA]
    Biological Process: neuromuscular junction development [IMP]
    regulation of synaptic growth at neuromuscular junction [IMP]
    regulation of microtubule depolymerization [IMP]
    Molecular Function: GTP binding [IEA]
    GTPase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGSAVQVIN ASEEHTFVLN EDALSEVLMR DEVKDRFVCV VSVAGAFRKG KSFLLDFFLR  60
   61 YMYSKYVHHD ATDWLGGESD PLEGFSWRGG SERDTTGILM WSDIFLHDYP NGDKIAIILL 120
  121 DTQGAFDSQS TVRDCATVFA LSTMLSSVQI YNLSQNIQED DLQHLQLFTE YGRLALADTG 180
  181 KKPFQRLQFL VRDWSFPYEA EYGALGGDKI LKRRLEVSDK QHPELQSLRR HISSCFTEVA 240
  241 CFLMPHPGLN VATNPKFDGR LQDITPEFKS SLRSLVPMLL APDNLVYKEI SGQRVRARDL 300
  301 IQYFQSYMNI YKGNELPEPK SMLVATAEAN HLTAVAAAKE LYGQLMEEVC GGTRPYLSTA 360
  361 HLQTEHLRVK DKALFQFAAK RKMGGEEFTE KFRKQLEDDL EEVFTNYQAH NESKNIFKAA 420
  421 RTPAVYFACA VIMYILSGIF GLVGLYTFAN FCNLVMGVAL LTLALWAYIR YSGELSDFGG 480
  481 KLDDFATLLW EKFMRPIYHG CMEKGIHHVA THATEMAVGG GAASYRSQTS VNASNGKVKR 540
  541 S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..450] PSI-BLAST 115.0 Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain; Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
    2 View Details [451..541] MSA 1.031995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.04984885046942 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.166100211611062 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.159702441149605 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.149170905385965 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.147838751017739 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle