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View Structure Prediction Details

Protein: atl-PB, atl-PA, ...
Organism: Drosophila melanogaster
Length: 541 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atl-PB, atl-PA, ....

Description E-value Query
Range
Subject
Range
gi|114577013 - gi|114577013|ref|XP_001168056.1| PREDICTED: ADP-ribosylation factor-like 6 interacting protein 2 iso...
571.0 [0..2] [532..57]

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Predicted Domain #1
Region A:
Residues: [1-450]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGSAVQVIN ASEEHTFVLN EDALSEVLMR DEVKDRFVCV VSVAGAFRKG KSFLLDFFLR  60
   61 YMYSKYVHHD ATDWLGGESD PLEGFSWRGG SERDTTGILM WSDIFLHDYP NGDKIAIILL 120
  121 DTQGAFDSQS TVRDCATVFA LSTMLSSVQI YNLSQNIQED DLQHLQLFTE YGRLALADTG 180
  181 KKPFQRLQFL VRDWSFPYEA EYGALGGDKI LKRRLEVSDK QHPELQSLRR HISSCFTEVA 240
  241 CFLMPHPGLN VATNPKFDGR LQDITPEFKS SLRSLVPMLL APDNLVYKEI SGQRVRARDL 300
  301 IQYFQSYMNI YKGNELPEPK SMLVATAEAN HLTAVAAAKE LYGQLMEEVC GGTRPYLSTA 360
  361 HLQTEHLRVK DKALFQFAAK RKMGGEEFTE KFRKQLEDDL EEVFTNYQAH NESKNIFKAA 420
  421 RTPAVYFACA VIMYILSGIF GLVGLYTFAN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 115.0
Match: 1dg3A
Description: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain; Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.04984885046942 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.166100211611062 bayes_pls_golite062009
pyrophosphatase activity 0.159702441149605 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.149170905385965 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.147838751017739 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [451-541]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FCNLVMGVAL LTLALWAYIR YSGELSDFGG KLDDFATLLW EKFMRPIYHG CMEKGIHHVA  60
   61 THATEMAVGG GAASYRSQTS VNASNGKVKR S

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle