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Protein Overview: svp-PA

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..190] MSA 7.483996 View MSA. No confident structure predictions are available.
2 View Details [191..282] PSI-BLAST 30.39794 Retinoic acid receptor DNA-binding domain
3 View Details [283..582] PSI-BLAST 60.0 LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA
4 View Details [583..746] FFAS03 1.18 No description for 2j63A was found.

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2
Term Confidence Notes
  • transcription regulator activity
  • 4.00967542385368 bayes_pls_golite062009
  • DNA binding
  • 3.60745514727532 bayes_pls_golite062009
  • nucleic acid binding
  • 3.47256374293954 bayes_pls_golite062009
  • binding
  • 2.96409924710655 bayes_pls_golite062009
  • transcription activator activity
  • 2.9532663930699 bayes_pls_golite062009
  • transcription factor activity
  • 2.90769972671972 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 2.72967350701574 bayes_pls_golite062009
  • protein binding
  • 2.44501340584871 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 2.40923942043513 bayes_pls_golite062009
  • transcription repressor activity
  • 1.88834375049208 bayes_pls_golite062009
  • ligand-dependent nuclear receptor activity
  • 1.49515149729803 bayes_pls_golite062009
  • transcription factor binding
  • 1.38523780690867 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
  • 1.26452462867497 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
  • 0.68943696300126 bayes_pls_golite062009
  • transcription cofactor activity
  • 0.58115018700114 bayes_pls_golite062009
  • receptor activity
  • 0.126253365586995 bayes_pls_golite062009
  • catalytic activity
  • 0.101795606736461 bayes_pls_golite062009
  • structural constituent of ribosome
  • 0.0613150171780344 bayes_pls_golite062009
    3
    Term Confidence Notes
  • transcription regulator activity
  • 5.53061626347066 bayes_pls_golite062009
  • DNA binding
  • 4.92165988569962 bayes_pls_golite062009
  • nucleic acid binding
  • 4.78024150262074 bayes_pls_golite062009
  • transcription activator activity
  • 4.53302455129434 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 4.11614358606713 bayes_pls_golite062009
  • transcription factor activity
  • 4.0914094580319 bayes_pls_golite062009
  • ligand-dependent nuclear receptor activity
  • 3.89763470197726 bayes_pls_golite062009
  • binding
  • 3.85318710398432 bayes_pls_golite062009
  • transcription repressor activity
  • 3.83878598697109 bayes_pls_golite062009
  • protein binding
  • 3.21524787168952 bayes_pls_golite062009
  • transcription factor binding
  • 2.68044489404568 bayes_pls_golite062009
  • receptor activity
  • 2.52514802829523 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 2.38308182853979 bayes_pls_golite062009
  • steroid hormone receptor activity
  • 2.30195937604451 bayes_pls_golite062009
  • molecular transducer activity
  • 1.86480242237659 bayes_pls_golite062009
  • signal transducer activity
  • 1.86480242237659 bayes_pls_golite062009
  • transcription cofactor activity
  • 1.73827483890179 bayes_pls_golite062009
  • nuclear hormone receptor binding
  • 1.60419100774741 bayes_pls_golite062009
  • retinoic acid receptor binding
  • 1.59968001933699 bayes_pls_golite062009
  • retinoid X receptor binding
  • 1.45560845709347 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
  • 1.34794228300778 bayes_pls_golite062009
  • transcription coactivator activity
  • 1.23834725221597 bayes_pls_golite062009
  • transcription corepressor activity
  • 0.995333369475571 bayes_pls_golite062009
  • retinoic acid receptor activity
  • 0.853869057774515 bayes_pls_golite062009
  • protein dimerization activity
  • 0.797229273848179 bayes_pls_golite062009
  • hormone receptor binding
  • 0.74373733735458 bayes_pls_golite062009
  • promoter binding
  • 0.58091332905515 bayes_pls_golite062009
  • protein N-terminus binding
  • 0.57701453824007 bayes_pls_golite062009
  • thyroid hormone receptor activity
  • 0.49784404390361 bayes_pls_golite062009
  • lipid binding
  • 0.475303782949439 bayes_pls_golite062009
  • protein heterodimerization activity
  • 0.45265806678057 bayes_pls_golite062009
  • receptor binding
  • 0.418843034756825 bayes_pls_golite062009
  • ligand-regulated transcription factor activity
  • 0.202197503742221 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity, enhancer binding
  • 0.15737167800277 bayes_pls_golite062009
  • catalytic activity
  • 0.106902059021677 bayes_pls_golite062009
    4 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.71

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle