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Protein Overview: RS3_RAT

General Information:
Name(s) found: RS3_RAT [Swiss-Prot]
Description(s) found:
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  • gi|57164151|ref|NP_001009239.1| ribosomal protein S3 [Rattus norvegicus] [NCBI NR]
  • gi|56970487|gb|AAH88450.1| Ribosomal protein S3 [Rattus norvegicus] [NCBI NR]
  • gi|51703302|sp|P62909.1|RS3_RAT RecName: Full=40S ribosomal protein S3 [NCBI NR]
  • ref|XP_341889.1| similar to 40S ribosomal protein S3 [Rattus norvegicus] [NCBI NR]
  • gi|149068850|gb|EDM18402.1| rCG40478, isoform CRA_l [Rattus norvegicus] [NCBI NR]
  • 40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=1 SV=1 [Swiss-Prot]
  • Ensembl_locations(Chr-bp):1-154287531 40S ribosomal protein S3 [hmr_yeast5_DM3-1_pombe.fasta]
  • similar to 40S ribosomal protein S3 [HMR_022704-rand.fasta]
  • similar to 40S ribosomal protein S3 [Rattus norvegicus]gi|6755372|ref|NP_036182.1| ribosomal protein S3 [Mus musculus]gi|15421127|gb|AAK95377.1| ribosomal protein S3 [Mus musculus]gi|14715107|gb|AAH10721.1| Ribosomal protein S3 [Mus musculus]gi|57728| [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10116 40S ribosomal protein S3 [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta]
  • Tax_Id=10116 Ensembl_locations(Chr-bp):1-154287531 40S ribosomal protein S3 [EBI-IPI_Drosophila_na_12-13-2007_con_reversed.fasta]
  • 40S ribosomal protein S3 [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • ribosomal protein S3 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • rCG40478, isoform CRA_l [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Ribosomal protein S3 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 40S RIBOSOMAL PROTEIN S3 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10116 Gene_Symbol=Rps3 40S ribosomal protein S3 [rat-ipi-250309-contam.fasta]
  • 40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 [011711_HMR.fasta]
  • 40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=2 SV=1 [UNIPROT_RAT_07-21-2011_reversed.fasta]
    • Organism: Rattus norvegicus
    Length: 243 amino acids

    Gene Ontology:
    Cellular Component: nucleus [UNKNOWN]
    dendrite [IDA]
    ribonucleoprotein complex [UNKNOWN][ISS]
    cytoplasm [UNKNOWN][IEA]
    cytosolic small ribosomal subunit [UNKNOWN][IDA]
    cytosol [UNKNOWN]
    endomembrane system [IDA]
    ruffle membrane [UNKNOWN]
    ribosome [IEA]
    intracellular [IEA]
    Biological Process: negative regulation of DNA repair [UNKNOWN]
    induction of apoptosis [UNKNOWN]
    negative regulation of NF-kappaB transcription factor activity [UNKNOWN]
    activation of caspase activity [UNKNOWN]
    response to DNA damage stimulus [UNKNOWN]
    translational elongation [UNKNOWN]
    translation [IC]
    Molecular Function: NF-kappaB binding [UNKNOWN]
    protein kinase binding [UNKNOWN]
    RNA binding [IEA]
    protein binding [UNKNOWN]
    structural constituent of ribosome [IC][UNKNOWN]
    endonuclease activity [UNKNOWN]
    mRNA binding [UNKNOWN]
    DNA-(apurinic or apyrimidinic site) lyase activity [UNKNOWN]
    damaged DNA binding [UNKNOWN]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVQISKKRK FVADGIFKAE LNEFLTRELA EDGYSGVEVR VTPTRTEIII LATRTQNVLG  60
   61 EKGRRIRELT AVVQKRFGFP EGSVELYAEK VATRGLCAIA QAESLRYKLL GGLAVRRACY 120
  121 GVLRFIMESG AKGCEVVVSG KLRGQRAKSM KFVDGLMIHS GDPVNYYVDT AVRHVLLRQG 180
  181 VLGIKVKIML PWDPSGKIGP KKPLPDHVSI VEPKDEILPT TPISEQKGGK PEPPAMPQPV 240
  241 PTA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..243] PSI-BLAST 50.0 Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle