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Protein Overview: TADA2_ORYSJ

General Information:
Name(s) found: TADA2_ORYSJ [Swiss-Prot]
Description(s) found:
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  • gi|215704213|dbj|BAG93053.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115455373|ref|NP_001051287.1| Os03g0750800 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113549758|dbj|BAF13201.1| Os03g0750800 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|108711105|gb|ABF98900.1| transcriptional adaptor, putative, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica GN=ADA2 PE=2 SV=2 [Swiss-Prot]
  • Transcriptional adapter ADA2 - Oryza sativa subsp. japonica (Rice) [Swiss-Prot]
  • Os03g0750800 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
  • transcriptional adaptor, putative, expressed [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 567 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSRGVPNS GDDETNHRSK RRRVASSGDA PDSLSAACGG AGEGGGKKAL YHCNYCNKDI  60
   61 SGKIRIKCSK CPDFDLCVEC FSVGAEVTPH RSNHPYRVMD NLSFPLICPD WNADEEILLL 120
  121 EGIEMYGLGN WAEVAEHVGT KTKAQCIDHY TTAYMNSPCY PLPDMSHVNG KNRKELLAMA 180
  181 KVQGESKKVL PGDLTPKDES PFSPPRVKVE DALGEGLAGR SPSHIAGGAN KKASNVGQFK 240
  241 DGANVAKVED GHVDRSIGVK KPRYSADEGP SLTELSGYNS KRHEFDPEYD NDAEQALAEM 300
  301 EFKETDSETD RELKLRVLRI YLSRLDERKR RKEFILERNL LFPNPLEKDL TNEDKEVYHR 360
  361 YKVFMRFLSK EEHEALVRSV LEERKIRRRI QELQECRSAG CRTLAEAKIH IEQKRKKEHE 420
  421 VNAQKAKESG QLLSNTKVVH KTNRPMKIES DGNLDQKKGG ASLDSTGRDS PKTTGHAGTK 480
  481 HWDDWDIVGF PGAELLSTSE KNLCCQNRLL PNHYLKMQEV LMQEIFKGSV AKKEDAHVLF 540
  541 KVDPAKVDNV YDMVTKKLGT NEEAPTV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..100] PSI-BLAST 6.522879 No description for 2dipA was found.
    2 View Details [101..246] PSI-BLAST 17.522879 c-Myb, DNA-binding domain
    3 View Details [247..476] FFAS03 1.03 crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution
    4 View Details [477..567] PSI-BLAST 29.39794 Solution structure of SWIRM domain of mouse transcriptional adaptor 2-like

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  5.9854106358726 bayes_pls_golite062009
  • binding
    		•  2.78710909602478 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.72498741013971 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  2.58717417598341 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  2.47310253065851 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.32387297115017 bayes_pls_golite062009
  • DNA binding
    		•  2.00904221080834 bayes_pls_golite062009
  • protein binding
    		•  1.5975811408548 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  1.56027347294593 bayes_pls_golite062009
  • transcription factor activity
    		•  1.22579085356684 bayes_pls_golite062009
  • transcription factor binding
    		•  1.11842175076436 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.90321253993065 bayes_pls_golite062009
  • ligase activity
    		•  0.708614855601548 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.350170315296021 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.255669498391574 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.233838999434784 bayes_pls_golite062009
  • catalytic activity
    		•  0.14112008370434 bayes_pls_golite062009
  • transcription activator activity
    		•  0.126093965701234 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  0.024993043379745 bayes_pls_golite062009
    2
    Term Confidence Notes
  • histone acetyltransferase activity
    		•  5.80609397811031 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  5.80609397811031 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  5.49431089902672 bayes_pls_golite062009
  • transcription regulator activity
    		•  5.13863038737912 bayes_pls_golite062009
  • DNA binding
    		•  4.66369707598026 bayes_pls_golite062009
  • N-acyltransferase activity
    		•  4.57418118498868 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.51452285155271 bayes_pls_golite062009
  • N-acetyltransferase activity
    		•  4.37954729923498 bayes_pls_golite062009
  • transcription factor activity
    		•  4.06706589695599 bayes_pls_golite062009
  • acetyltransferase activity
    		•  3.80908511328212 bayes_pls_golite062009
  • acyltransferase activity
    		•  3.35206890637362 bayes_pls_golite062009
  • transferase activity, transferring acyl groups other than amino-acyl groups
    		•  3.30532537006075 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.16896789933192 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  3.08442186629685 bayes_pls_golite062009
  • binding
    		•  3.02779747447702 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.41271657675151 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.91962622287073 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.85172306285414 bayes_pls_golite062009
  • transcription activator activity
    		•  1.77700860354597 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.73068440195944 bayes_pls_golite062009
  • chromatin binding
    		•  1.68956710349366 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  1.4315541802752 bayes_pls_golite062009
  • RNA polymerase activity
    		•  1.4315541802752 bayes_pls_golite062009
  • transcription factor binding
    		•  1.40653841901929 bayes_pls_golite062009
  • protein deacetylase activity
    		•  1.23680480131205 bayes_pls_golite062009
  • histone deacetylase activity
    		•  1.18932416576802 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.84983974758882 bayes_pls_golite062009
  • protein binding
    		•  0.830419844171551 bayes_pls_golite062009
  • histone binding
    		•  0.557787598121402 bayes_pls_golite062009
  • deacetylase activity
    		•  0.530687254192222 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.292409156157916 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.2679415219517 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.25931464844298 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • histone acetyltransferase activity
    		•  5.80609397811031 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  5.80609397811031 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  5.49431089902672 bayes_pls_golite062009
  • transcription regulator activity
    		•  5.13863038737912 bayes_pls_golite062009
  • DNA binding
    		•  4.66369707598026 bayes_pls_golite062009
  • N-acyltransferase activity
    		•  4.57418118498868 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.51452285155271 bayes_pls_golite062009
  • N-acetyltransferase activity
    		•  4.37954729923498 bayes_pls_golite062009
  • transcription factor activity
    		•  4.06706589695599 bayes_pls_golite062009
  • acetyltransferase activity
    		•  3.80908511328212 bayes_pls_golite062009
  • acyltransferase activity
    		•  3.35206890637362 bayes_pls_golite062009
  • transferase activity, transferring acyl groups other than amino-acyl groups
    		•  3.30532537006075 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.16896789933192 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  3.08442186629685 bayes_pls_golite062009
  • binding
    		•  3.02779747447702 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.41271657675151 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.91962622287073 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.85172306285414 bayes_pls_golite062009
  • transcription activator activity
    		•  1.77700860354597 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.73068440195944 bayes_pls_golite062009
  • chromatin binding
    		•  1.68956710349366 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  1.4315541802752 bayes_pls_golite062009
  • RNA polymerase activity
    		•  1.4315541802752 bayes_pls_golite062009
  • transcription factor binding
    		•  1.40653841901929 bayes_pls_golite062009
  • protein deacetylase activity
    		•  1.23680480131205 bayes_pls_golite062009
  • histone deacetylase activity
    		•  1.18932416576802 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.84983974758882 bayes_pls_golite062009
  • protein binding
    		•  0.830419844171551 bayes_pls_golite062009
  • histone binding
    		•  0.557787598121402 bayes_pls_golite062009
  • deacetylase activity
    		•  0.530687254192222 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.292409156157916 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.2679415219517 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.25931464844298 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle