YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: clp-3

General Information:
Name(s) found: clp-3 / CE40281 [WormBase]
Description(s) found:
Found 11 descriptions.
SHOW ALL
  • WBGene00000544 locus:clp-3 status:Partially_confirmed UniProt:Q9U2B2 protein_id:CAB60389.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 702 amino acids

    Gene Ontology:
    Cellular Component: intracellular [ICLink to PubMed article][IEALink to PubMed article]
    Biological Process: cell death [IMPLink to PubMed article]
    proteolysis [IEALink to PubMed article][ISSLink to PubMed article]
    Molecular Function: cysteine-type peptidase activity [ISSLink to PubMed article]
    calcium-dependent cysteine-type endopeptidase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATDDYNFPS ITTASSEVDS PEEEYEDDKE TDAYNFSTIT NESSEVARQR EEENKDEKEI  60
   61 ARTSFSSISE HDEKIHAYNF SEILKEFVGD DCGDVAGKLF DQLSSMIPRD SVGRGLTNIF 120
  121 SSRELESLAG DLISKNSHDF VAVNSETGGI NGALAGNEMF NMGGETNSLS SIGKIVLDNI 180
  181 VSGKFKRECH VYVPLSCQPI YFHEERQKCL DEKRLFEDPQ FPANNSSIYV KVRPKDHIVW 240
  241 KRPGELFANP RLIGSDKTHF DVKLGRLENR WFLSGAANLS LRDELFYRVV PPDQSFTEKY 300
  301 AGIFHFQFWR YGEWVDVVID DRLPTVNGTL CYMSSPGGSE FWGPLLEKAY AKLLGTYEHL 360
  361 NDPYTEQALW QASASFTGGL TQWFDIFMAD EMAVLAMIMR GVQMGSLIVC LNIDVNEKGV 420
  421 RQKNGLIKGY GYCITGVNLM ETEWEKAPLI RIRSPWGKVK WKGDFCYRSH RWFGLDKEKR 480
  481 ESFRIKEDGE FWMSLKDFMV EFTDVYCCNL SADTMHEVEK MTEVKVMEHQ SQQWIQASFE 540
  541 GEWSSRIGTA GGCDDHDTFC TNLQYEIHFR ATDSYDSNHK CTIIAALFQK NRDHCVYKGL 600
  601 ELFLIGLLVY EMPGPNEKVT PEMVKSQTPI ADSKLFKDSR EANIRFTVPL GHYVIVPSTY 660
  661 DPDQDGEFLL RIFTNVDFDK THALSNGIGL ICKSDGHLLT VP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..179] MSA 4.164993 View MSA. No confident structure predictions are available.
    2 View Details [180..702] PSI-BLAST 166.0 Calpain large subunit, C-terminal domain (domain IV); Calpain large subunit, middle domain (domain III); Calpain large subunit, catalytic domain (domain II)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • peptidase activity
    		•  3.28868056127375 bayes_pls_golite062009
  • cysteine-type peptidase activity
    		•  3.05412701733177 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  3.01472402774099 bayes_pls_golite062009
  • hydrolase activity
    		•  2.29464693834116 bayes_pls_golite062009
  • endopeptidase activity
    		•  2.26699762664334 bayes_pls_golite062009
  • cysteine-type endopeptidase activity
    		•  1.95802900199539 bayes_pls_golite062009
  • binding
    		•  1.77258741259391 bayes_pls_golite062009
  • small conjugating protein-specific protease activity
    		•  1.07520173658976 bayes_pls_golite062009
  • catalytic activity
    		•  1.05972260874031 bayes_pls_golite062009
  • protein binding
    		•  0.896934807256194 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.833714375875501 bayes_pls_golite062009
  • calcium ion binding
    		•  0.687204894708051 bayes_pls_golite062009
  • ubiquitin-specific protease activity
    		•  0.495368836247989 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.313326619937245 bayes_pls_golite062009
  • calcium-dependent cysteine-type endopeptidase activity
    		•  0.196538841514154 bayes_pls_golite062009
  • DNA binding
    		•  0.053663265361386 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle