| Protein: | clp-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 702 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clp-3.
| Description | E-value | Query Range |
Subject Range |
|
|
606.0 | [0..163] | [701..3] |
|
Region A: Residues: [1-179] |
1 11 21 31 41 51
| | | | | |
1 MATDDYNFPS ITTASSEVDS PEEEYEDDKE TDAYNFSTIT NESSEVARQR EEENKDEKEI 60
61 ARTSFSSISE HDEKIHAYNF SEILKEFVGD DCGDVAGKLF DQLSSMIPRD SVGRGLTNIF 120
121 SSRELESLAG DLISKNSHDF VAVNSETGGI NGALAGNEMF NMGGETNSLS SIGKIVLDN
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [180-702] |
1 11 21 31 41 51
| | | | | |
1 IVSGKFKREC HVYVPLSCQP IYFHEERQKC LDEKRLFEDP QFPANNSSIY VKVRPKDHIV 60
61 WKRPGELFAN PRLIGSDKTH FDVKLGRLEN RWFLSGAANL SLRDELFYRV VPPDQSFTEK 120
121 YAGIFHFQFW RYGEWVDVVI DDRLPTVNGT LCYMSSPGGS EFWGPLLEKA YAKLLGTYEH 180
181 LNDPYTEQAL WQASASFTGG LTQWFDIFMA DEMAVLAMIM RGVQMGSLIV CLNIDVNEKG 240
241 VRQKNGLIKG YGYCITGVNL METEWEKAPL IRIRSPWGKV KWKGDFCYRS HRWFGLDKEK 300
301 RESFRIKEDG EFWMSLKDFM VEFTDVYCCN LSADTMHEVE KMTEVKVMEH QSQQWIQASF 360
361 EGEWSSRIGT AGGCDDHDTF CTNLQYEIHF RATDSYDSNH KCTIIAALFQ KNRDHCVYKG 420
421 LELFLIGLLV YEMPGPNEKV TPEMVKSQTP IADSKLFKDS REANIRFTVP LGHYVIVPST 480
481 YDPDQDGEFL LRIFTNVDFD KTHALSNGIG LICKSDGHLL TVP
|
| Detection Method: | |
| Confidence: | 166.0 |
| Match: | 1kfuL |
| Description: | Calpain large subunit, C-terminal domain (domain IV); Calpain large subunit, middle domain (domain III); Calpain large subunit, catalytic domain (domain II) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 3.28868056127375 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 3.05412701733177 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 3.01472402774099 | bayes_pls_golite062009 |
| hydrolase activity | 2.29464693834116 | bayes_pls_golite062009 |
| endopeptidase activity | 2.26699762664334 | bayes_pls_golite062009 |
| cysteine-type endopeptidase activity | 1.95802900199539 | bayes_pls_golite062009 |
| binding | 1.77258741259391 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 1.07520173658976 | bayes_pls_golite062009 |
| catalytic activity | 1.05972260874031 | bayes_pls_golite062009 |
| protein binding | 0.896934807256194 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.833714375875501 | bayes_pls_golite062009 |
| calcium ion binding | 0.687204894708051 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 0.495368836247989 | bayes_pls_golite062009 |
| nucleic acid binding | 0.313326619937245 | bayes_pls_golite062009 |
| calcium-dependent cysteine-type endopeptidase activity | 0.196538841514154 | bayes_pls_golite062009 |
| DNA binding | 0.053663265361386 | bayes_pls_golite062009 |
