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Protein Overview: URN1

General Information:
Name(s) found: URN1 / YPR152C [SGD]
Description(s) found:
Found 29 descriptions.
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  • Putative protein of unknown function containing WW and FF domains; overexpression causes accumulation of cells in G1 phase [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 465 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGEWQEFKT PAGKKYYYNK NTKQSRWEKP NLKKGSNLES NAKESQTERK PTFSLELVNG  60
   61 WHLIIYNDGT KLYFNDDSKE FKNDISQEDD SRCRSLIESL DKEKLVLLIG VARGYTMREE 120
  121 DIDKILESCN EEIHLFKRNQ DEVERKDEIS EEAGDVKSPL QESHTGLVSG YGSSSGEEDE 180
  181 EEDEEEDEEN EEQIVNQDIS IIDDLNRIDT DDIDERNIFF ELFDRYKLDK FSTWSLQSKK 240
  241 IENDPDFYKI RDDTVRESLF EEWCGERSGN ATAEESDSED NSEDDSEVLE PTKYHYLAQI 300
  301 VANAGTIAPD TIPQDIRKQQ KALYKAYKIK EYIPSKRDQD KFVSQLLFYY KTFDLEQRKE 360
  361 IFCDCLRDHE RDFTGAVESL RQDKELIDRW QTLLKAPADS SSIEDILLSI EHRCCVSPIV 420
  421 VTEPRYYVVG ILEKTVVWVR WLAAEVGPSS RFTPVGAGNE PINPE

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) AIM4 URN1

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
    View Run ASF1 3829 - low filter Green EM, et al (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen URN1 HAC1 2 Unpublished Fields Lab Data
    View Screen URN1 VPS45 2 Unpublished Fields Lab Data
    View Screen URN1 ECM2 2 Unpublished Fields Lab Data
    View Screen URN1 BUD31 2 Unpublished Fields Lab Data
    View Screen URN1 YPR137C-A, YAR010C 1 Unpublished Fields Lab Data
    View Screen URN1 NSL1 1 Unpublished Fields Lab Data
    View Screen APC5 URN1 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data URN1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] PSI-BLAST 37.228787 Splicing factor prp40
    2 View Details [97..174] deduced N/A No confident structure predictions are available.
    3 View Details [175..312] PSI-BLAST 11.221849 Hypa/FBP11
    4 View Details [313..465] deduced N/A No confident structure predictions are available.
    5 View Details [343..465] PSI-BLAST 11.0 No description for 2doeA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.24368858184725 bayes_pls_golite062009
  • protein binding
    		•  0.261137474693717 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle