| Protein: | URN1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 465 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for URN1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..465] | [1..465] |
|
|
6.0E-69 | [3..410] | [435..849] |
|
|
2.0E-67 | [3..410] | [433..847] |
|
|
2.0E-67 | [3..410] | [433..847] |
|
|
3.0E-67 | [2..410] | [302..700] |
|
|
4.0E-65 | [3..407] | [193..607] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MRGEWQEFKT PAGKKYYYNK NTKQSRWEKP NLKKGSNLES NAKESQTERK PTFSLELVNG 60
61 WHLIIYNDGT KLYFNDDSKE FKNDISQEDD SRCRSL
|
| Detection Method: |  |
| Confidence: | 37.228787 |
| Match: | 1o6wA_ |
| Description: | Splicing factor prp40 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.24368858184725 | bayes_pls_golite062009 |
| protein binding | 0.261137474693717 | bayes_pls_golite062009 |
|
Region A: Residues: [97-174] |
1 11 21 31 41 51
| | | | | |
1 IESLDKEKLV LLIGVARGYT MREEDIDKIL ESCNEEIHLF KRNQDEVERK DEISEEAGDV 60
61 KSPLQESHTG LVSGYGSS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [175-312] |
1 11 21 31 41 51
| | | | | |
1 SGEEDEEEDE EEDEENEEQI VNQDISIIDD LNRIDTDDID ERNIFFELFD RYKLDKFSTW 60
61 SLQSKKIEND PDFYKIRDDT VRESLFEEWC GERSGNATAE ESDSEDNSED DSEVLEPTKY 120
121 HYLAQIVANA GTIAPDTI
|
| Detection Method: | |
| Confidence: | 11.221849 |
| Match: | 1h40A_ |
| Description: | Hypa/FBP11 |
|
Region A: Residues: [313-465] |
1 11 21 31 41 51
| | | | | |
1 PQDIRKQQKA LYKAYKIKEY IPSKRDQDKF VSQLLFYYKT FDLEQRKEIF CDCLRDHERD 60
61 FTGAVESLRQ DKELIDRWQT LLKAPADSSS IEDILLSIEH RCCVSPIVVT EPRYYVVGIL 120
121 EKTVVWVRWL AAEVGPSSRF TPVGAGNEPI NPE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [343-465] |
1 11 21 31 41 51
| | | | | |
1 VSQLLFYYKT FDLEQRKEIF CDCLRDHERD FTGAVESLRQ DKELIDRWQT LLKAPADSSS 60
61 IEDILLSIEH RCCVSPIVVT EPRYYVVGIL EKTVVWVRWL AAEVGPSSRF TPVGAGNEPI 120
121 NPE
|
| Detection Method: | |
| Confidence: | 11.0 |
| Match: | 2doeA |
| Description: | No description for 2doeA was found. |
