| Protein: | URN1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 465 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for URN1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..465] | [1..465] |
|
|
6.0E-69 | [3..410] | [435..849] |
|
|
2.0E-67 | [3..410] | [433..847] |
|
|
2.0E-67 | [3..410] | [433..847] |
|
|
3.0E-67 | [2..410] | [302..700] |
|
|
4.0E-65 | [3..407] | [193..607] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MRGEWQEFKT PAGKKYYYNK NTKQSRWEKP NLKKGSNLES NAKESQTERK PTFSLELVNG 60
61 WHLIIYNDGT KLYFNDDSKE FKNDISQEDD SRCRSL
|
| Detection Method: |  |
| Confidence: | 37.228787 |
| Match: | 1o6wA_ |
| Description: | Splicing factor prp40 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.24368858184725 | bayes_pls_golite062009 |
| protein binding | 0.261137474693717 | bayes_pls_golite062009 |
|
Region A: Residues: [97-174] |
1 11 21 31 41 51
| | | | | |
1 IESLDKEKLV LLIGVARGYT MREEDIDKIL ESCNEEIHLF KRNQDEVERK DEISEEAGDV 60
61 KSPLQESHTG LVSGYGSS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.605 | c.47.1 | Thioredoxin-like |
| View | Download | 0.637 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.485 | a.69.2 | Ypt/Rab-GAP domain of gyp1p |
| View | Download | 0.638 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.638 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.637 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.605 | c.47.1 | Thioredoxin-like |
| View | Download | 0.603 | c.47.1 | Thioredoxin-like |
| View | Download | 0.485 | a.69.2 | Ypt/Rab-GAP domain of gyp1p |
| View | Download | 0.467 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.444 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.438 | c.47.1 | Thioredoxin-like |
| View | Download | 0.435 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.417 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.405 | a.55.1 | IHF-like DNA-binding proteins |
| View | Download | 0.393 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.387 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.371 | d.95.2 | Homing endonucleases |
| View | Download | 0.365 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.358 | a.1.1 | Globin-like |
| View | Download | 0.343 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.341 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.339 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.335 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.334 | a.60.8 | HRDC-like |
| View | Download | 0.328 | a.4.1 | Homeodomain-like |
| View | Download | 0.323 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.307 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.301 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.292 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.286 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.285 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.273 | a.17.1 | p8-MTCP1 |
| View | Download | 0.264 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.264 | a.126.1 | Serum albumin-like |
| View | Download | 0.260 | d.40.1 | CI-2 family of serine protease inhibitors |
| View | Download | 0.254 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.253 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.248 | a.5.2 | UBA-like |
| View | Download | 0.246 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.242 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.239 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.238 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.237 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.236 | a.130.1 | Chorismate mutase II |
| View | Download | 0.232 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.229 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.229 | a.74.1 | Cyclin-like |
| View | Download | 0.227 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.222 | c.47.1 | Thioredoxin-like |
| View | Download | 0.212 | b.82.3 | cAMP-binding domain-like |
| View | Download | 0.203 | a.68.1 | Wiscott-Aldrich syndrome protein, WASP, C-terminal domain |
| View | Download | 0.202 | a.74.1 | Cyclin-like |
|
Region A: Residues: [175-312] |
1 11 21 31 41 51
| | | | | |
1 SGEEDEEEDE EEDEENEEQI VNQDISIIDD LNRIDTDDID ERNIFFELFD RYKLDKFSTW 60
61 SLQSKKIEND PDFYKIRDDT VRESLFEEWC GERSGNATAE ESDSEDNSED DSEVLEPTKY 120
121 HYLAQIVANA GTIAPDTI
|
| Detection Method: | |
| Confidence: | 11.221849 |
| Match: | 1h40A_ |
| Description: | Hypa/FBP11 |
|
Region A: Residues: [313-465] |
1 11 21 31 41 51
| | | | | |
1 PQDIRKQQKA LYKAYKIKEY IPSKRDQDKF VSQLLFYYKT FDLEQRKEIF CDCLRDHERD 60
61 FTGAVESLRQ DKELIDRWQT LLKAPADSSS IEDILLSIEH RCCVSPIVVT EPRYYVVGIL 120
121 EKTVVWVRWL AAEVGPSSRF TPVGAGNEPI NPE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [343-465] |
1 11 21 31 41 51
| | | | | |
1 VSQLLFYYKT FDLEQRKEIF CDCLRDHERD FTGAVESLRQ DKELIDRWQT LLKAPADSSS 60
61 IEDILLSIEH RCCVSPIVVT EPRYYVVGIL EKTVVWVRWL AAEVGPSSRF TPVGAGNEPI 120
121 NPE
|
| Detection Method: | |
| Confidence: | 11.0 |
| Match: | 2doeA |
| Description: | No description for 2doeA was found. |
