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Protein Overview: YME1

Protein Complex Data

  PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
View Details Qiu et al. (2008) MGR1 YME1

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run VAM3 Sample: HX11 - both fusion and trans-SNARE complex formation take place. Hao Xu, et al. (2010)
View Run VAM3 Sample: HX12 - trans-SNARE complex formation and fusion are inhibited (control). Hao Xu, et al. (2010)
View Run VAM3 Sample: HX14 - mixture in detergent (control). Hao Xu, et al. (2010)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data YME1 Huh WK, et al. (2003)

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..182] MSA 1.577994 View MSA. No confident structure predictions are available.
2 View Details [183..254] deduced N/A No confident structure predictions are available.
3 View Details [255..447] PSI-BLAST 959.0 AAA domain of cell division protein FtsH
4 View Details [448..552] PSI-BLAST 959.0 AAA domain of cell division protein FtsH
5 View Details [553..632] MSA 2.297981 View MSA. No confident structure predictions are available.
6 View Details [633..747] MSA 6.258988 View MSA. No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2
Term Confidence Notes
  • hydrolase activity
  • 1.62872031361523 bayes_pls_golite062009
  • binding
  • 1.49433277484566 bayes_pls_golite062009
  • catalytic activity
  • 0.767627914425245 bayes_pls_golite062009
  • protein binding
  • 0.657913936613888 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
  • 0.578045489085857 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
  • 0.576706256405554 bayes_pls_golite062009
  • SNARE binding
  • 0.1851395346962 bayes_pls_golite062009
    3
    Term Confidence Notes
  • hydrolase activity
  • 2.55157966585974 bayes_pls_golite062009
  • binding
  • 2.0681607836408 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
  • 1.85030653553169 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
  • 1.84811666933472 bayes_pls_golite062009
  • catalytic activity
  • 1.00104173493322 bayes_pls_golite062009
  • motor activity
  • 0.677658554107 bayes_pls_golite062009
  • purine nucleotide binding
  • 0.569910969126728 bayes_pls_golite062009
  • purine ribonucleotide binding
  • 0.568840867400671 bayes_pls_golite062009
  • ribonucleotide binding
  • 0.568779924702229 bayes_pls_golite062009
  • nucleotide binding
  • 0.564275755355315 bayes_pls_golite062009
  • pyrophosphatase activity
  • 0.540750418412449 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
  • 0.517457589081898 bayes_pls_golite062009
  • nucleic acid binding
  • 0.318452816722389 bayes_pls_golite062009
  • protein binding
  • 0.193768631623192 bayes_pls_golite062009
  • ATP binding
  • 0.1860481660648 bayes_pls_golite062009
  • adenyl ribonucleotide binding
  • 0.152859582615242 bayes_pls_golite062009
  • adenyl nucleotide binding
  • 0.138615225841109 bayes_pls_golite062009
  • microtubule motor activity
  • 0.11674780318211 bayes_pls_golite062009
  • DNA strand annealing activity
  • 0.0887104483353087 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle