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Protein Overview: YMR317W

General Information:
Name(s) found: YMR317W [SGD]
Description(s) found:
Found 17 descriptions.
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  • Putative protein of unknown function with some similarity to sialidase from Trypanosoma; YMR317W is not an essential gene [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 1140 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSGSKSTT ATTTSHSSTT TTSSTTSTTT PTTTSTTSTT STKVTTSPEI IVSSSSTLVS  60
   61 SVVPEFTSSS SLSSDTIASI LSSESLVSIF SSLSYTSSDI SSTSVNDVES STSGPSNSYS 120
  121 ALSSTNAQLS SSTTETDSIS SSAIQTSSPQ TSSSNGGGSS SEPLGKSSVL ETTASSSDTT 180
  181 AVTSSTFTTL TDVSSSPKIS SSGSAVTSVG TTSDASKEVF SSSTSDVSSL LSSTSSPASS 240
  241 TISETLPFSS TILSITSSPV SSEAPSATSS SVSSEASSST SSSVSSEAPL ATSSVVSSEA 300
  301 PSSTSSVVSS EAPSSTSSSV SSEISSTTSS SVSSEAPLAT SSVVSSEAPS STSSSVSSEI 360
  361 SSTTSSSVSS EAPLATSSVV SSEAPSSTSS SVSSEAPSST SSSVSSEAPS STSSSVSSEI 420
  421 SSTKSSVMSS EVSSATSSLV SSEAPSAISS LASSRLFSSK NTSVTSTLVA TEASSVTSSL 480
  481 RPSSETLASN SIIESSLSTG YNSTVSTTTS AASSTLGSKV SSSNSRMATS KTSSTSSDLS 540
  541 KSSVIFGNSS TVTTSPSASI SLTASPLPSV WSDITSSEAS SISSNLASSS APSDNNSTIA 600
  601 SASLIVTKTK NSVVSSIVSS ITSSETTNES NLATSSTSLL SNKATARSLS TSNATSASNV 660
  661 PTGTFSSMSS HTSVITPGFS TSSASLAINS TVVSSSLAGY SFSTPESSPT TSTLVTSEAP 720
  721 STVSSMTTSA PFINNSTSAR PSPSTASFIT ESTSSISSVP LASGDVTSSL AAHNLTTFSA 780
  781 PSTSSAQLVS KSTTSSSILV TPRIDRSGNS STASRIATSL PNKTTFVSSL SSTSAHARNI 840
  841 FNSTVLATAK QIETLTSTVN CSNPTPNYNI TKTVIVSRET TAIGTVTSCS GGCTKNRKST 900
  901 TLITITDIDA STVTTCPEKE VTSTTSGDEA EHTTSTKISN FETSTFSESF KDMKTSQETK 960
  961 KAKPGSETVR SSSSFVEKTS PTTKASPSTS PSESKAAGNT SVATNASPST SPSESQGTGS1020
 1021 TSVEGAKSKS TKNSEGVSTT KAKNTSTVAK SSTESPIGRG ETTLETIIVS SQKSLLTSQL1080
 1081 SSSTEKVNRS TTKPTAAIHG TSSSAKQSTT YTVSTAKENT GASLNINMKA FVIGAIALVA1140
 1141

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run MLP2 #26 Asynchronous Prep4-TiO2 Phosphopeptide enriched, Steps1-2 Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..362] MSA 4.158994 View MSA. No confident structure predictions are available.
    2 View Details [363..448] deduced N/A No confident structure predictions are available.
    3 View Details [449..1054] MSA 5.158997 View MSA. No confident structure predictions are available.
    4 View Details [1055..1140] deduced N/A Confident ab initio structure predictions are available.
    5 View Details [622..772] deduced N/A No confident structure predictions are available.
    6 View Details [773..1140] FFAS03 1.98 30S subunit


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.66

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle