| Protein: | YMR317W |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1140 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR317W.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [4..1040] | [27..1063] |
|
Region A: Residues: [1-362] |
1 11 21 31 41 51
| | | | | |
1 MGSSGSKSTT ATTTSHSSTT TTSSTTSTTT PTTTSTTSTT STKVTTSPEI IVSSSSTLVS 60
61 SVVPEFTSSS SLSSDTIASI LSSESLVSIF SSLSYTSSDI SSTSVNDVES STSGPSNSYS 120
121 ALSSTNAQLS SSTTETDSIS SSAIQTSSPQ TSSSNGGGSS SEPLGKSSVL ETTASSSDTT 180
181 AVTSSTFTTL TDVSSSPKIS SSGSAVTSVG TTSDASKEVF SSSTSDVSSL LSSTSSPASS 240
241 TISETLPFSS TILSITSSPV SSEAPSATSS SVSSEASSST SSSVSSEAPL ATSSVVSSEA 300
301 PSSTSSVVSS EAPSSTSSSV SSEISSTTSS SVSSEAPLAT SSVVSSEAPS STSSSVSSEI 360
361 SS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [363-448] |
1 11 21 31 41 51
| | | | | |
1 TTSSSVSSEA PLATSSVVSS EAPSSTSSSV SSEAPSSTSS SVSSEAPSST SSSVSSEISS 60
61 TKSSVMSSEV SSATSSLVSS EAPSAI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [449-1054] |
1 11 21 31 41 51
| | | | | |
1 SSLASSRLFS SKNTSVTSTL VATEASSVTS SLRPSSETLA SNSIIESSLS TGYNSTVSTT 60
61 TSAASSTLGS KVSSSNSRMA TSKTSSTSSD LSKSSVIFGN SSTVTTSPSA SISLTASPLP 120
121 SVWSDITSSE ASSISSNLAS SSAPSDNNST IASASLIVTK TKNSVVSSIV SSITSSETTN 180
181 ESNLATSSTS LLSNKATARS LSTSNATSAS NVPTGTFSSM SSHTSVITPG FSTSSASLAI 240
241 NSTVVSSSLA GYSFSTPESS PTTSTLVTSE APSTVSSMTT SAPFINNSTS ARPSPSTASF 300
301 ITESTSSISS VPLASGDVTS SLAAHNLTTF SAPSTSSAQL VSKSTTSSSI LVTPRIDRSG 360
361 NSSTASRIAT SLPNKTTFVS SLSSTSAHAR NIFNSTVLAT AKQIETLTST VNCSNPTPNY 420
421 NITKTVIVSR ETTAIGTVTS CSGGCTKNRK STTLITITDI DASTVTTCPE KEVTSTTSGD 480
481 EAEHTTSTKI SNFETSTFSE SFKDMKTSQE TKKAKPGSET VRSSSSFVEK TSPTTKASPS 540
541 TSPSESKAAG NTSVATNASP STSPSESQGT GSTSVEGAKS KSTKNSEGVS TTKAKNTSTV 600
601 AKSSTE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1055-1140] |
1 11 21 31 41 51
| | | | | |
1 SPIGRGETTL ETIIVSSQKS LLTSQLSSST EKVNRSTTKP TAAIHGTSSS AKQSTTYTVS 60
61 TAKENTGASL NINMKAFVIG AIALVA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.862 | d.1.1 | Microbial ribonucleases |
|
Region A: Residues: [622-772] |
1 11 21 31 41 51
| | | | | |
1 TSSETTNESN LATSSTSLLS NKATARSLST SNATSASNVP TGTFSSMSSH TSVITPGFST 60
61 SSASLAINST VVSSSLAGYS FSTPESSPTT STLVTSEAPS TVSSMTTSAP FINNSTSARP 120
121 SPSTASFITE STSSISSVPL ASGDVTSSLA A
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [773-1140] |
1 11 21 31 41 51
| | | | | |
1 HNLTTFSAPS TSSAQLVSKS TTSSSILVTP RIDRSGNSST ASRIATSLPN KTTFVSSLSS 60
61 TSAHARNIFN STVLATAKQI ETLTSTVNCS NPTPNYNITK TVIVSRETTA IGTVTSCSGG 120
121 CTKNRKSTTL ITITDIDAST VTTCPEKEVT STTSGDEAEH TTSTKISNFE TSTFSESFKD 180
181 MKTSQETKKA KPGSETVRSS SSFVEKTSPT TKASPSTSPS ESKAAGNTSV ATNASPSTSP 240
241 SESQGTGSTS VEGAKSKSTK NSEGVSTTKA KNTSTVAKSS TESPIGRGET TLETIIVSSQ 300
301 KSLLTSQLSS STEKVNRSTT KPTAAIHGTS SSAKQSTTYT VSTAKENTGA SLNINMKAFV 360
361 IGAIALVA
|
| Detection Method: | |
| Confidence: | 1.98 |
| Match: | 1dv4A |
| Description: | 30S subunit |
Matching Structure (courtesy of the PDB): |
|
