| Protein: | YMR317W |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1140 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR317W.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [4..1040] | [27..1063] |
|
Region A: Residues: [1-362] |
1 11 21 31 41 51
| | | | | |
1 MGSSGSKSTT ATTTSHSSTT TTSSTTSTTT PTTTSTTSTT STKVTTSPEI IVSSSSTLVS 60
61 SVVPEFTSSS SLSSDTIASI LSSESLVSIF SSLSYTSSDI SSTSVNDVES STSGPSNSYS 120
121 ALSSTNAQLS SSTTETDSIS SSAIQTSSPQ TSSSNGGGSS SEPLGKSSVL ETTASSSDTT 180
181 AVTSSTFTTL TDVSSSPKIS SSGSAVTSVG TTSDASKEVF SSSTSDVSSL LSSTSSPASS 240
241 TISETLPFSS TILSITSSPV SSEAPSATSS SVSSEASSST SSSVSSEAPL ATSSVVSSEA 300
301 PSSTSSVVSS EAPSSTSSSV SSEISSTTSS SVSSEAPLAT SSVVSSEAPS STSSSVSSEI 360
361 SS
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [363-448] |
1 11 21 31 41 51
| | | | | |
1 TTSSSVSSEA PLATSSVVSS EAPSSTSSSV SSEAPSSTSS SVSSEAPSST SSSVSSEISS 60
61 TKSSVMSSEV SSATSSLVSS EAPSAI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.440 | a.11.1 | Acyl-CoA binding protein |
| View | Download | 0.410 | a.28.1 | ACP-like |
| View | Download | 0.350 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.281 | a.3.1 | Cytochrome c |
| View | Download | 0.262 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.204 | b.1.1 | Immunoglobulin |
|
Region A: Residues: [449-1054] |
1 11 21 31 41 51
| | | | | |
1 SSLASSRLFS SKNTSVTSTL VATEASSVTS SLRPSSETLA SNSIIESSLS TGYNSTVSTT 60
61 TSAASSTLGS KVSSSNSRMA TSKTSSTSSD LSKSSVIFGN SSTVTTSPSA SISLTASPLP 120
121 SVWSDITSSE ASSISSNLAS SSAPSDNNST IASASLIVTK TKNSVVSSIV SSITSSETTN 180
181 ESNLATSSTS LLSNKATARS LSTSNATSAS NVPTGTFSSM SSHTSVITPG FSTSSASLAI 240
241 NSTVVSSSLA GYSFSTPESS PTTSTLVTSE APSTVSSMTT SAPFINNSTS ARPSPSTASF 300
301 ITESTSSISS VPLASGDVTS SLAAHNLTTF SAPSTSSAQL VSKSTTSSSI LVTPRIDRSG 360
361 NSSTASRIAT SLPNKTTFVS SLSSTSAHAR NIFNSTVLAT AKQIETLTST VNCSNPTPNY 420
421 NITKTVIVSR ETTAIGTVTS CSGGCTKNRK STTLITITDI DASTVTTCPE KEVTSTTSGD 480
481 EAEHTTSTKI SNFETSTFSE SFKDMKTSQE TKKAKPGSET VRSSSSFVEK TSPTTKASPS 540
541 TSPSESKAAG NTSVATNASP STSPSESQGT GSTSVEGAKS KSTKNSEGVS TTKAKNTSTV 600
601 AKSSTE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1055-1140] |
1 11 21 31 41 51
| | | | | |
1 SPIGRGETTL ETIIVSSQKS LLTSQLSSST EKVNRSTTKP TAAIHGTSSS AKQSTTYTVS 60
61 TAKENTGASL NINMKAFVIG AIALVA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.862 | d.1.1 | Microbial ribonucleases |
| View | Download | 0.838 | d.81.1 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |
| View | Download | 0.759 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.696 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.691 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.653 | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.618 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.597 | d.17.4 | NTF2-like |
| View | Download | 0.503 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.473 | b.1.18 | E set domains |
| View | Download | 0.465 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.463 | d.29.1 | Ribosomal protein L31e |
| View | Download | 0.461 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.450 | d.17.4 | NTF2-like |
| View | Download | 0.447 | b.34.5 | Translation proteins SH3-like domain |
| View | Download | 0.428 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.396 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.381 | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.353 | c.47.1 | Thioredoxin-like |
| View | Download | 0.349 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.337 | d.31.1 | Cdc48 domain 2-like |
| View | Download | 0.324 | d.1.1 | Microbial ribonucleases |
| View | Download | 0.303 | d.93.1 | SH2 domain |
| View | Download | 0.295 | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.288 | b.24.1 | Hyaluronate lyase-like, C-terminal domain |
| View | Download | 0.287 | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
| View | Download | 0.278 | d.15.1 | Ubiquitin-like |
| View | Download | 0.275 | d.74.3 | RBP11-like subunits of RNA polymerase |
| View | Download | 0.273 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.259 | d.110.3 | PYP-like sensor domain (PAS domain) |
| View | Download | 0.255 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.245 | d.53.1 | Ribosomal protein S3 C-terminal domain |
| View | Download | 0.242 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.234 | d.93.1 | SH2 domain |
| View | Download | 0.222 | d.105.1 | Clathrin adaptor appendage, alpha and beta chain-specific domain |
| View | Download | 0.221 | b.61.4 | Quinohemoprotein amine dehydrogenase A chain, domain 3 |
| View | Download | 0.217 | d.110.1 | Profilin (actin-binding protein) |
| View | Download | 0.212 | b.12.1 | Lipase/lipooxygenase domain (PLAT/LH2 domain) |
| View | Download | 0.208 | c.47.1 | Thioredoxin-like |
|
Region A: Residues: [622-772] |
1 11 21 31 41 51
| | | | | |
1 TSSETTNESN LATSSTSLLS NKATARSLST SNATSASNVP TGTFSSMSSH TSVITPGFST 60
61 SSASLAINST VVSSSLAGYS FSTPESSPTT STLVTSEAPS TVSSMTTSAP FINNSTSARP 120
121 SPSTASFITE STSSISSVPL ASGDVTSSLA A
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [773-1140] |
1 11 21 31 41 51
| | | | | |
1 HNLTTFSAPS TSSAQLVSKS TTSSSILVTP RIDRSGNSST ASRIATSLPN KTTFVSSLSS 60
61 TSAHARNIFN STVLATAKQI ETLTSTVNCS NPTPNYNITK TVIVSRETTA IGTVTSCSGG 120
121 CTKNRKSTTL ITITDIDAST VTTCPEKEVT STTSGDEAEH TTSTKISNFE TSTFSESFKD 180
181 MKTSQETKKA KPGSETVRSS SSFVEKTSPT TKASPSTSPS ESKAAGNTSV ATNASPSTSP 240
241 SESQGTGSTS VEGAKSKSTK NSEGVSTTKA KNTSTVAKSS TESPIGRGET TLETIIVSSQ 300
301 KSLLTSQLSS STEKVNRSTT KPTAAIHGTS SSAKQSTTYT VSTAKENTGA SLNINMKAFV 360
361 IGAIALVA
|
| Detection Method: | |
| Confidence: | 1.98 |
| Match: | 1dv4A |
| Description: | 30S subunit |
Matching Structure (courtesy of the PDB): |
|
