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Protein Overview: RIM13

General Information:
Name(s) found: RIM13 / YMR154C [SGD]
Description(s) found:
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  • gi|825559|emb|CAA89790.1| unknown [Saccharomyces cerevisiae] [NCBI NR]
  • gi|6323804|ref|NP_013875.1| Calpain-like cysteine protease involved in proteolytic activation of Rim101p in response to alkaline pH; has similarity to A. nidulans palB; Rim13p [Saccharomyces cerevisiae] [NCBI NR]
  • gi|2497162|sp|Q03792.1|RIM13_YEAST RecName: Full=Calpain-like protease 1; AltName: Full=Cysteine protease RIM13; AltName: Full=Calpain-7; AltName: Full=Regulator of IME2 protein 13 [NCBI NR]
  • pir||S54512 hypothetical protein YMR154c - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • (Q03792) Hypothetical 83.1 kDa protein in IMP1-HLJ1 intergenic region [Swiss-Prot]
  • Calpain-like protease 1 OS=Saccharomyces cerevisiae GN=RIM13 PE=1 SV=1 [Swiss-Prot]
  • RIM13 Calpain-like cysteine protease [mips]
  • Calpain-like cysteine protease involved in proteolytic activation of Rim101p in response to alkaline pH; has similarity to A. nidulans palB [SGD]
  • RIM13, Chr XIII from 565998-568181, reverse complement [yeast_orfs2]
  • Chr XIII from 565998-568181, reverse complement [yeastorf3.fasta]
  • Chr XIII from 568181-565998, reverse complement [yeastorf5.fasta]
  • RIM13 SGDID:S0004763, Chr XIII from 568181-565998, reverse complement, Verified ORF [yeastflysequest.fasta]
  • Regulator of IME2 (RIM); Cysteine protease similar to E. nidulans palB [Saccharomyces cerevisiae]gi|825559|emb|CAA89790.1| unknown [Saccharomyces cerevisiae]gi|2497162|sp|Q03792|YM29_YEAST Hypothetical 83.1 kDa protein in IMP1-HLJ1 intergenic regiongi| [nrdb_11152004_Chlamydomonas]
  • RIM13 SGDID:S000004763, Chr XIII from 568181-565998, reverse complement, Verified ORF, "Calpain-like protease involved in proteolytic activation of Ri0m101p in response to alkaline pH; has similarity to A. nidulans palB" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • RIM13 SGDID:S000004763, Chr XIII from 568181-565998, reverse complement, Verified ORF, "Calpain-like protease involved in proteolytic activation of Rim101p in response to alkaline pH; has similarity to A. nidulans palB" [yeast-contam.fasta]
  • RIM13 SGDID:S000004763, Chr XIII from 568181-565998, reverse complement, Verified ORF, "Calpain-like cysteine protease involved in proteolytic activation of Rim101p in response to alkaline pH; has similarity to A. nidulans palB" [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta]
  • Calpain-like protease 1 (Cysteine protease RIM13) (Calpain-7) (Regulator of IME2 protein 13) [nr-271106-contam.fasta]
  • Calpain-like protease involved in proteolytic activation of Rim101p in response to alkaline pH; has similarity to A. nidulans palB; Rim13p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • unknown [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • Calpain-like protease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RIM13 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • RIM13 SGDID:S000004763, Chr XIII from 568182-565999, Genome Release 64-1-1, reverse complement, Verified ORF, "Calpain-like cysteine protease involved in proteolytic activation of Rim101p in response to alkaline pH; has similarity to A. nidulans palB" [yeast-030211-contam.fasta]
  • RIM13 SGDID:S000004763, Chr XIII from 568182-565999, Genome Release 64-2-1, reverse complement, Verified ORF, "Calpain-like cysteine protease; involved in proteolytic activation of Rim101p in response to alkaline pH; localizes to punctate structures in alkaline conditions and in vps4 mutant; has similarity to A. nidulans palB" [20141208_orf_trans.fasta]
  • YMR154C SGDID:S000004763, Chr XIII from 568182-565999, Genome Release 64-1-1, reverse complement, Verified ORF, "Calpain-like cysteine protease involved in proteolytic activation of Rim101p in response to alkaline pH; has similarity to A. nidulans palB" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 727 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: protein processing [IGILink to PubMed article][IMPLink to PubMed article]
    Molecular Function: cysteine-type endopeptidase activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDWHEFNAA IKSIYCNAEG DSSSIINRLV GLAMKSEDST FIEAVLVLKE NVSKVDKQLR  60
   61 FLWLTSTINS RFYPPIPISE ASPVSWNKTE YCAPGTEELQ RRYPGRAKLQ NEEDYSGGIE 120
  121 QCRDVPDCSL VASLINLRSK NLNLPLIKQI SSTKYHVNLS FNGSNKRLVT VDISQIPTSV 180
  181 DGKQLSLKSN DISDKIGELA LLLVSKGTYS TDGSNISIDT YRLSGFLPEI TQVNSYPFEK 240
  241 LWKFHKSNLC LMGAGTGNRS NDMIKPLVEN HDYSIIDITY DSRLVKLRDP RNSALNVEIS 300
  301 YEQYLKNFKQ LYLNWNQEKL FKRSQVLHFR YDTSRYNKFS IVADKPLFHL VNNSKVTETV 360
  361 WLLLESHLQD EGSQENRSVS FLNEAPECII CPIEPPVECG GNHIGLQLVK LRLDAETERL 420
  421 LYCYSTTNNN FSIHSFSVVK EICFQRLKDT KSLFAKVLFS FPYEIEGKAS FDTCNFFQNP 480
  481 TFELEVHSEQ DYQVLMDAAC ISTSSHDLIN IQVYYFNDYE LIKPIMFDNH YQPGQGLKQD 540
  541 VPILTNVKYM IVCSTYGPPA STEFELLASI RLSSSWRLIS GITLRSVNLI YGTYPYHCRN 600
  601 RFHWKETSDK LKIQMTLPTK KYSTNKLFIR VVPVESSARL RMRCNIFEPE SALCVYECQE 660
  661 YRTCPSGGIV IPDLEVSRTN IVVLMIERSV PISSCLPTEG QLDELELFVG SSQKIRIEKY 720
  721 SDDVIPK

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) CAB3 CHD1 CKA1 CKA2 CKB1 CKB2 ELF1 HOT1 MSC3 NRG1 PGA2 REH1 RIM13 VHS3 YLR407W

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen PRE10 RIM13 2 Unpublished Fields Lab Data

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..219] PSI-BLAST 143.0 Calpain large subunit, C-terminal domain (domain IV); Calpain large subunit, middle domain (domain III); Calpain large subunit, catalytic domain (domain II)
    2 View Details [220..324] PSI-BLAST 143.0 Calpain large subunit, C-terminal domain (domain IV); Calpain large subunit, middle domain (domain III); Calpain large subunit, catalytic domain (domain II)
    3 View Details [325..455] PSI-BLAST 143.0 Calpain large subunit, C-terminal domain (domain IV); Calpain large subunit, middle domain (domain III); Calpain large subunit, catalytic domain (domain II)
    4 View Details [456..525] PSI-BLAST 143.0 Calpain large subunit, C-terminal domain (domain IV); Calpain large subunit, middle domain (domain III); Calpain large subunit, catalytic domain (domain II)
    5 View Details [526..595] PSI-BLAST 18.522879 Calpain large subunit, C-terminal domain (domain IV); Calpain large subunit, middle domain (domain III); Calpain large subunit, catalytic domain (domain II)
    6 View Details [596..727] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle