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Protein Overview: YML096W

General Information:
Name(s) found: YML096W [SGD]
Description(s) found:
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  • gi|6323542|ref|NP_013613.1| Putative protein of unknown function with similarity to asparagine synthetases; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YML096W is not an essential gene and partially overlaps the verified gen [NCBI NR]
  • gi|575706|emb|CAA86641.1| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR]
  • gi|2494766|sp|Q04489.1|ASND1_YEAST RecName: Full=Asparagine synthetase domain-containing protein YML096W [NCBI NR]
  • pir||S49630 probable membrane protein YML096w - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • Uncharacterized protein YML096W - Saccharomyces cerevisiae (Baker's yeast) [Swiss-Prot]
  • Asparagine synthetase domain-containing protein YML096W OS=Saccharomyces cerevisiae GN=YML096W PE=1 SV=1 [Swiss-Prot]
  • Putative asparagine synthase [mips]
  • Putative protein of unknown function with similarity to asparagine synthetases; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YML096W is not an essential gene and partially overlaps the verified gene RAD10 [SGD]
  • YML096W, Chr XIII from 79909-81486 [yeast_orfs2]
  • Chr XIII from 79909-81486 [yeastorf3.fasta]
  • (Q04489) Hypothetical 59.5 kDa protein in VPS9-RAD10 intergenic region [4932.FASTACCERV.txt]
  • YML096W SGDID:S0004562, Chr XIII from 79909-81486, Uncharacterized ORF [yeastflysequest.fasta]
  • Yml096wp [Saccharomyces cerevisiae]gi|575706|emb|CAA86641.1| unnamed protein product [Saccharomyces cerevisiae]gi|2494766|sp|Q04489|YMJ6_YEAST Hypothetical 59.5 kDa protein in VPS9-RAD10 intergenic regiongi|1077289|pir||S49630 probable membrane protein [nrdb_11152004_Chlamydomonas]
  • YML096W SGDID:S000004562, Chr XIII from 79909-81486, Uncharacterized ORF, "Hypothetical protein" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • YML096W SGDID:S000004562, Chr XIII from 79909-81486, Uncharacterized ORF, "Putative protein of unknown function with similarity to asparagine synthetases; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YML096W is not an essenti [yeast-contam.fasta]
  • unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Uncharacterized protein YML096W [nr-271106-contam.fasta]
  • Putative protein of unknown function with similarity to asparagine synthetases; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YML096W is not an essential gene and partially overlaps the verified gene RAD10; Yml096wp [Saccharom [nr-271106-contam.fasta]
  • YML096W SGDID:S000004562, Chr XIII from 79909-81486, Uncharacterized ORF, "Putative protein of unknown function with similarity to asparagine synthetases; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YML096W is not an essential gene and partially overlaps the verified gene RAD10" [yeast-bovrabprots.fasta]
  • [chemostatdb.fasta]
  • Asparagine synthetase domain-containing protein YML096W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML096W PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • YML096W SGDID:S000004562, Chr XIII from 79909-81486, Genome Release 64-1-1, Uncharacterized ORF, "Putative protein of unknown function with similarity to asparagine synthetases; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YML096W is not an essential gene and partially overlaps the verified gene RAD10" [yeast-030211-contam.fasta]
  • YML096W SGDID:S000004562, Chr XIII from 79909-81486, Genome Release 64-2-1, Uncharacterized ORF, "Putative protein with similarity to asparagine synthetases; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YML096W is not an essential gene and partially overlaps the verified gene RAD10" [20141208_orf_trans.fasta]
  • TR2173|c0_g1_i1|g.1653 ORF TR2173|c0_g1_i1|g.1653 TR2173|c0_g1_i1|m.1653 type:complete len:526 (+) TR2173|c0_g1_i1:47-1624(+) [Y12_S_cerevisiae-Sep2015-contam.fasta]
  • ID=asmbl_4512|g.2715 ORF ID=asmbl_4512|g.2715 ID=asmbl_4512|m.2715 type:complete len:526 (+) ID=asmbl_4512:60-1637(+) [Y12_quiver_Trinity_v2_2_0_PASA_2June2016-contam.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 525 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGILLHYCP NNNYLNDELI EFPEGTEFGD TTCTNESSIF NKIIPYIAAR GPNYSSLRAV  60
   61 KAYRISWFSS VLSLRQPFTK QSINVDDRYF LQFNGELYNK EISQGDNDSL YIASMLQNLK 120
  121 EGMGVIDVIK SLEGEYAYTI YDVNSSKLYF GRDPIGRRSL SYSVTPDNEL YVASVTGSAG 180
  181 SFQDCIGGVI YEYDTRTKLL NSNQRSHLPY EVTSEIDLNF TSLSEVSKNL YAVLRDSVKK 240
  241 RVESIHPRHI ENSPIAVLFS GGIDCSVIVA LICEVLQEND YKCGKPVIEL LNVSFENPRT 300
  301 GLFPSDTPDR KLSINSAKTL QNLYPNVDIK LVEVDVPYDE YLKWKPFVIN LMYPKQTEMD 360
  361 LSIAIAFFFA SRGRGFLTSL NGERTPYQRH GIVLFSGLGA DELYGGYHKF ANKPPHELVE 420
  421 ELTRQINNIY DRNLNRDDKV IAHNGVEVRY PFLDEYVIKL STAEIPINFK VNKLILRKVA 480
  481 SQYLKLDGIS SEPKRAIQFG AKSAKMTKDG NKHGTDLLKE NRNCS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data YML096W Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..203] PSI-BLAST 228.457575 Asparagine synthetase B, C-terminal domain; Asparagine synthetase B, N-terminal domain
    2 View Details [204..525] PSI-BLAST 228.457575 Asparagine synthetase B, C-terminal domain; Asparagine synthetase B, N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity
    		•  2.99185607397345 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.14663773925119 bayes_pls_golite062009
  • DNA binding
    		•  0.992954560970173 bayes_pls_golite062009
  • catalytic activity
    		•  0.828867994386867 bayes_pls_golite062009
  • binding
    		•  0.752095595503409 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.0940838340168359 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle