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Protein Overview: YML096W

General Information:
Name(s) found: YML096W [SGD]
Description(s) found:
Found 25 descriptions.
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  • Putative protein of unknown function with similarity to asparagine synthetases; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YML096W is not an essential gene and partially overlaps the verified gene RAD10 [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 525 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGILLHYCP NNNYLNDELI EFPEGTEFGD TTCTNESSIF NKIIPYIAAR GPNYSSLRAV  60
   61 KAYRISWFSS VLSLRQPFTK QSINVDDRYF LQFNGELYNK EISQGDNDSL YIASMLQNLK 120
  121 EGMGVIDVIK SLEGEYAYTI YDVNSSKLYF GRDPIGRRSL SYSVTPDNEL YVASVTGSAG 180
  181 SFQDCIGGVI YEYDTRTKLL NSNQRSHLPY EVTSEIDLNF TSLSEVSKNL YAVLRDSVKK 240
  241 RVESIHPRHI ENSPIAVLFS GGIDCSVIVA LICEVLQEND YKCGKPVIEL LNVSFENPRT 300
  301 GLFPSDTPDR KLSINSAKTL QNLYPNVDIK LVEVDVPYDE YLKWKPFVIN LMYPKQTEMD 360
  361 LSIAIAFFFA SRGRGFLTSL NGERTPYQRH GIVLFSGLGA DELYGGYHKF ANKPPHELVE 420
  421 ELTRQINNIY DRNLNRDDKV IAHNGVEVRY PFLDEYVIKL STAEIPINFK VNKLILRKVA 480
  481 SQYLKLDGIS SEPKRAIQFG AKSAKMTKDG NKHGTDLLKE NRNCS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data YML096W Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..203] PSI-BLAST 228.457575 Asparagine synthetase B, C-terminal domain; Asparagine synthetase B, N-terminal domain
    2 View Details [204..525] PSI-BLAST 228.457575 Asparagine synthetase B, C-terminal domain; Asparagine synthetase B, N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity
    		•  2.99185607397345 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.14663773925119 bayes_pls_golite062009
  • DNA binding
    		•  0.992954560970173 bayes_pls_golite062009
  • catalytic activity
    		•  0.828867994386867 bayes_pls_golite062009
  • binding
    		•  0.752095595503409 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.0940838340168359 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle