Protein Overview: YML045W-A

General Information:
Name(s) found:	YML045W-A [SGD]
Description(s) found: SHOW ONLY BEST	gi\|7839191\|ref\|NP_058176.1\| Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag; Yml [NCBI NR] gi\|642310\|emb\|CAA87829.1\| TYA [Saccharomyces cerevisiae] [NCBI NR] gi\|2497233\|sp\|Q04706.1\|YM11A_YEAST RecName: Full=Transposon Ty1-ML1 Gag polyprotein; AltName: Full=Gag-p49; AltName: Full=Transposon Ty1 protein A; Short=TY1A; Short=TYA; AltName: Full=p58; Contains: RecName: Full=Capsid protein; Short=CA; AltName: Full=G [NCBI NR] gi\|1072509\|pir\|\|S50947 TyA protein - yeast (Saccharomyces cerevisiae) retrotransposon Ty1 [NCBI NR] (Q04706) Transposon Ty1 protein A [Swiss-Prot] Transposon Ty1-ML1 Gag polyprotein OS=Saccharomyces cerevisiae GN=TY1A-ML1 PE=2 SV=1 [Swiss-Prot] TY1A TY1A protein [mips] - TY1A - TY1A protein [mips] Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag [SGD] YML045W-A, Chr XIII from 184461-185783 [yeast_orfs2] Chr XIII from 184461-185783 [yeastorf3.fasta] YML045W-A SGDID:S0007381, Chr XIII from 184461-185783, Ty ORF [yeastflysequest.fasta] TyA Gag protein; the main structural constituent of virus-like particles (VLPs) [Saccharomyces cerevisiae]gi\|642310\|emb\|CAA87829.1\| TYA [Saccharomyces cerevisiae]gi\|2497233\|sp\|Q04706\|YME5_YEAST Transposon Ty1 protein Agi\|1072509\|pir\|\|S50947 TyA protein [nrdb_11152004_Chlamydomonas] YML045W-A SGDID:S000007381, Chr XIII from 184461-185783, transposable_element_gene, "TyA Gag protein; the main structural constituent of virus-like particles (VLPs)" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta] YML045W-A SGDID:S000007381, Chr XIII from 184461-185783, transposable_element_gene, "Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of vi [yeast-contam.fasta] Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag; Yml045w-ap [Saccharomyces cerev [nr-271106-contam.fasta] Transposon Ty1 protein A [nr-271106-contam.fasta] TYA [Saccharomyces cerevisiae] [nr-271106-contam.fasta] YML045W-A SGDID:S000007381, Chr XIII from 184461-185783, transposable_element_gene, "Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag" [yeast-bovrabprots.fasta] [chemostatdb.fasta] Transposon Ty1-ML1 Gag polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1A-ML1 PE=2 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta] YML045W-A SGDID:S000007381, Chr XIII from 184461-185783, Genome Release 64-1-1, transposable_element_gene, "Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag" [yeast-030211-contam.fasta] YML045W-A SGDID:S000007381, Chr XIII from 184461-185783, Genome Release 64-2-1, transposable_element_gene, "Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag" [20141208_orf_trans.fasta]
Organism:	Saccharomyces cerevisiae
Length:	440 amino acids
Gene Ontology:
Cellular Component:	retrotransposon nucleocapsid [ISS]
Biological Process:	transposition, RNA-mediated [ISS]
Molecular Function:	RNA binding [ISS] protein binding [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSNYP NISHGSACAS VTSKEVHTNQ DPLDVSASKI QEYDKASTKA NSQQTTTPAS  60
   61 SAVPENLHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG WSFYGHPSMI PYTPYQMSPM 120
  121 YFPPGPQSQF PQYPSSVGTP LSTPSPESGN TFTDSSSADS DMTSTKKYVR PPPMLTSPND 180
  181 FPNWVKTYIK FLQNSNLGGI IPTVNGKPVR QITDDELTFL YNTFQIFAPS QFLPTWVKDI 240
  241 LSVDYTDIMK ILSKSIEKMQ SDTQEANDIV TLANLQYNGS TPADAFETKV TNIIDRLNNN 300
  301 GIHINNKVAC QLIMRGLSGE YKFLRYTRHR HLNMTVAELF LDIHAIYEEQ QGSRNSKPNY 360
  361 RRNPSDEKND SRSYTNTTKP KVIARNPQKT NNSKSKTARA HNVSTSNNSP STDNDSISKS 420
  421 TTEPIQLNNK HDLHLRPETY

Protein Complex Data

	PUBLICATION	TOPOLOGY	COCOMPLEXED PROTEINS
View Details	Qiu et al. (2008)		YDR210C-C YDR210C-D YML045W-A YOR343W-A YOR343W-B

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	RPA135	his-HA tag on RPA135	Schneider, DA, et al. (2006)
View Run	RPA135	his-HA tag on RPA135	Schneider, DA, et al. (2006)
View Run	CEP3	sample cbf3 from feb 2005	Sandall S, et all (2006)
View Run	ZDS1	Sample 2- cpn2 from june 2005	McCusker D, et al (2007)
View Run	ZDS1	Sample 3 - cpn + atp, from june 2005	McCusker D, et al (2007)
View Run	BOI1	Sample boi 1 with ha tag from october 2005	McCusker D, et al (2007)
View Run	BOI1	Sample boi1 with gst from october 2005	McCusker D, et al (2007)
View Run	BOI1	Sample bob1 (2nd set) from october 2005	McCusker D, et al (2007)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..162]	PSI-BLAST	6.522879	Sec24
2	View Details	[163..373]	deduced	N/A	No confident structure predictions are available.
3	View Details	[374..440]	FFAS03	1.38	No description for 2ihxA was found.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Protein Overview: YML045W-A

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: