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View Structure Prediction Details

Protein: YML045W-A
Organism: Saccharomyces cerevisiae
Length: 440 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YML045W-A.

Description E-value Query
Range
Subject
Range
YGR161C-D - Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...
YG13B_YEAST - Transposon Ty1-GR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T...
563.0 [0..1] [438..1]

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Predicted Domain #1
Region A:
Residues: [1-162]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSNYP NISHGSACAS VTSKEVHTNQ DPLDVSASKI QEYDKASTKA NSQQTTTPAS  60
   61 SAVPENLHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG WSFYGHPSMI PYTPYQMSPM 120
  121 YFPPGPQSQF PQYPSSVGTP LSTPSPESGN TFTDSSSADS DM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.522879
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [163-373]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSTKKYVRPP PMLTSPNDFP NWVKTYIKFL QNSNLGGIIP TVNGKPVRQI TDDELTFLYN  60
   61 TFQIFAPSQF LPTWVKDILS VDYTDIMKIL SKSIEKMQSD TQEANDIVTL ANLQYNGSTP 120
  121 ADAFETKVTN IIDRLNNNGI HINNKVACQL IMRGLSGEYK FLRYTRHRHL NMTVAELFLD 180
  181 IHAIYEEQQG SRNSKPNYRR NPSDEKNDSR S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [374-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YTNTTKPKVI ARNPQKTNNS KSKTARAHNV STSNNSPSTD NDSISKSTTE PIQLNNKHDL  60
   61 HLRPETY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.38
Match: 2ihxA
Description: No description for 2ihxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle