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Protein Overview: STP3

General Information:
Name(s) found: STP3 / YLR375W [SGD]
Description(s) found:
Found 22 descriptions.
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  • Zinc-finger protein of unknown function, possibly involved in pre-tRNA splicing and in uptake of branched-chain amino acids [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 343 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNANNSAMN HITLPPISSF DNLIKAAERQ YNGEASSAST HPTLPNMNIS NGSGSAGASS  60
   61 SMLSYQLLPH SNDVSRSNSS SSFLPSVQQP TEGSASASET SSSASPSRSI SPILKVAGPS 120
  121 SVGGAGVSTP HSTKINKPRK KKQCPICRNF YANLTTHKAT HLTPEDRPHK CPICHRGFAR 180
  181 NNDLLRHKKR HWKDEILSQS GVLSNHNDGK GGSVSPNDDD THEKMTPMNS VTDYAQLKSL 240
  241 HQIKGTFKCP FNSTLIQLDM DMYPYKLKPL NFETSNCHQT GVFSRCDTFK NHLKALHFEY 300
  301 PPGTKKKDRN VVPGRCKHCG LKFENVDVWL NEHVGKQCGY KYH

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details (MIPS) Mewes HW, et al. (2004) LOS1 SEN15 SEN2 SEN34 SEN54 STP1 STP2 STP3 STP4 TPT1 TRL1
    View Details Krogan NJ, et al. (2006) MSS1 NOP7 NTE1 PDS5 SOP4 STP3 YGR067C YTM1

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data STP3 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..84] PSI-BLAST 5.522879 Transcription factor IIIA, TFIIIA
    2 View Details [85..137] PSI-BLAST 50.626727 ZIF268
    3 View Details [138..197] PSI-BLAST 9.30103 ZIF268
    4 View Details [198..343] MSA 8.965996 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle