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Protein Overview: RNP1

General Information:
Name(s) found: RNP1 / YLL046C [SGD]
Description(s) found:
Found 26 descriptions.
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  • Ribonucleoprotein that contains two RNA recognition motifs (RRM) [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 249 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: ribosome biogenesis [IMPLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIEEIEFYN VNGKKTTTVV PENTKIKKRV LNDRRTLYVG NLPKNCRKQD LRDLFEPNYG  60
   61 KITINMLKKK PLKKPLKRFA FIEFQEGVNL KKVKEKMNGK IFMNEKIVIE NILTKEEKSF 120
  121 EKNQKSNKKT APDLKPLSTN TLYVKNIPMK STNEDLAKIF GVDPKNINFV RRELVDLRTN 180
  181 KVFFSDEFHT GEAFIKFDNL GTGDSIQKKC REFKGRKASN GRVLLVKIAS AKKNEQKQEG 240
  241 GDNTKIKQN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen ERT1 RNP1 2 Unpublished Fields Lab Data
    View Screen YIF1 RNP1 2 Unpublished Fields Lab Data
    View Screen RGD2 RNP1 2 Unpublished Fields Lab Data
    View Screen MPC54 RNP1 2 Unpublished Fields Lab Data
    View Screen ROM1 RNP1 2 Unpublished Fields Lab Data
    View Screen NAS2 RNP1 2 Unpublished Fields Lab Data
    View Screen PRP40 RNP1 2 Unpublished Fields Lab Data
    View Screen PML1 RNP1 2 Unpublished Fields Lab Data
    View Screen HMG1 RNP1 2 Unpublished Fields Lab Data
    View Screen FUN19 RNP1 2 Unpublished Fields Lab Data
    View Screen HBT1 RNP1 1 Unpublished Fields Lab Data
    View Screen ARG1 RNP1 1 Unpublished Fields Lab Data
    View Screen UBC6 RNP1 1 Unpublished Fields Lab Data
    View Screen SPO21 RNP1 1 Unpublished Fields Lab Data
    View Screen SPO21 RNP1 1 Unpublished Fields Lab Data
    View Screen SGF73 RNP1 1 Unpublished Fields Lab Data
    View Screen AML1 RNP1 1 Unpublished Fields Lab Data
    View Screen DNA2 RNP1 1 Unpublished Fields Lab Data
    View Screen NPA3 RNP1 1 Unpublished Fields Lab Data
    View Screen IML1 RNP1 1 Unpublished Fields Lab Data
    View Screen MPE1 RNP1 1 Unpublished Fields Lab Data
    View Screen YMR057C RNP1 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..119] PSI-BLAST 56.09691 Nuclear ribonucleoprotein A1 (RNP A1, UP1)
    2 View Details [120..249] PSI-BLAST 56.09691 Nuclear ribonucleoprotein A1 (RNP A1, UP1)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  3.21855128520939 bayes_pls_golite062009
  • binding
    		•  2.3703087647328 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.47284776517711 bayes_pls_golite062009
  • protein binding
    		•  0.89093640300829 bayes_pls_golite062009
  • mRNA binding
    		•  0.0462802122373264 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle